Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0506 ATGGGTAAGGTTCACGGATCTCTCGCACGTGCGGGGAAAGTGAGAGGACAAACTCCCAAAGTGGCGAAGCAAGACAAGAAGAAGAAGCCACGCGGACGTGCTCACAAGAGAATGCAATACAACCGCCGATTCGTCACCGCCGTGGTGGGATTCGGAAAGAAGCGTGGACCAAACTCGTCGGAGAAGTGA 189 0.545 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK* 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0506 62 MobiDBLite consensus disorder prediction 1 40 - -
Gso5g0506 62 MobiDBLite consensus disorder prediction 22 40 - -
Gso5g0506 62 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 1 62 - -
Gso5g0506 62 Pfam Ribosomal protein S30 3 59 IPR006846 GO:0003735|GO:0005840|GO:0006412
Gso5g0506 62 PANTHER 40S RIBOSOMAL PROTEIN S30 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0506 Gso-Chr5 5546481 5547375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0506 1 62 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 96.774 1.14e-30 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0506 K02983 - egt:105965546 118.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0506 5 5546481 5547375 Gso17g1200 17 11544987 11545903 GST
Gso1g1783 1 54630935 54631657 Gso5g0506 5 5546481 5547375 PCT
Gso11g0288 11 2421263 2421959 Gso5g0506 5 5546481 5547375 PCT