Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0501 ATGATTTCTGTGTTCCCCAAAACCCTAATCGCCACTCGTTTCCTTTCCCGAACCCGACCTCGAATACATACTCCCAAACTAACCGCCATTAGAACCATGAGCTCGTCCACCCAGCGCATGTTCCAGCTCAAGCTTGACCCAATAACGGGTAACTCTGAATGGGTCGTCATCGAAGACAACGACGACGGAGACGAAAGCTTCGCCCATAATTTCCACCAACCCCTCCTCGCCACGACGTCGTATCTGGACATGCTCAACGATTCCCCCAGAAACACTGCGTTTCGCCAAGCCATTCAAAAAACCATCACCAAACCTTGCCACGTTCTCGATATCGGTGCTGGAACTGGGTTGCTTTCGATGATGGCTGCACGTGCCATGGGTGATGAAGGGAGGGTCACGGCGTGTGAGTCTTACCTTCCAATGGTGAAGCTGATGAAGAAGGTGCTGCGAATTAATGGCATGGAGGGAAGAGTCAAGGTCATCAACAAGCGCTCGGATGAACTCGAAGTTGGTCTCGATATCCCTTCGCGTGCAGATGCTCTTGTGAGCGAGATACTTGATTCAGAGCTGCTGGGCGAGGGGCTTATACCGACCCTACAACATGCACATGACAATTTGTTGGTAGAAAATGCTCTGACTGTGCCATATCGAGCAACTACATACGGACAGCTGGTTGAAAGCACATTCTTATGGCAGTTGCATGATTTGCATAGCATTGAGGCTACTGTATCTGATGGCATTCAACTTACTCCTCCCGGACTTGATAGTGTGTTAAGTGTCAAACGTCAGCAATATGCCATGCATTGCAATCCTATACAAGAAGAAATAAAACTGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTCTGGAGAAACTGAGCTGTGTGTAAAGGCAACTAATGATGGGAGAATTCATGCTGTGGTCTCTTGGTGGGTACTTCAACTTGATCGTGAAGGGACCATCTATTATTCCACTGCTCCTAGGTGGATAAGCTCACCAACAATTACAAGTCCTGTTGGTTGGTGTGACCACTGGAAACAGTGTGTTTGGTTTGTTCCTGGCAGTGGTATTTCCATATTCAAAGGGGAAGAAATTCATTTACATGCTACTCATACTGAGACAAGTATCTCATATAATTTAGATACTCAAGTACCTACATCTGAGATTTTGAACCATAGGTGTATGACTGGAGATTTGCAGCTTGTACTGCCACCAGAAAGGGTTGCAATCTATGGAGACAAAGGATGGAGGCTTTCAATGTTGAAAGCAGTACAAAGCATGTTGCAGGGAAGAGATCACCCGTTATGCTTAGTTGCAGATGATAGTGTGTTTTTACCTCTTCTTGTGGCACAGCTTTCAGAAGCATCACATGTAATGTCATTACTTCCGGGGCTTAAGGAAAGAGGCCTACAATATTTGCAAGCGGCTGCCCATGCAAATGGTTTGTCACGTAATTGCATAGAAGTTCTTGAAAAAAGGGTGAAACAGTTAACCATGCATGATATACACCAGAAAAAGGTTGATCTGTTGATAGCAGAACCTTTCTATGTAGGGCATGATGGCATGCTTCCATGGCAGAACCTGCGGTTTTGGAAGGATCGTACAACACTTAATGATATCCTCTCTGAAGATGCTCTGATAATTCCTAGTAAAGGAATATTGAGAGCATGTGCCATCTCTCTTCCTGATCTTTGGAAAAGTCGTTGTTGCTTGAGTAATGTTGAAGGTTTTGACCATTCAGTTGTAAATGCTACACTGGGGGCCTGCAGTAATCTACCTGAACTAGAAGAGGGTCCTTGCCTGCCTTTTTTTGTCTGGCAGTGTGGAGAATTTGATGTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTTTCAAAACAAATATGCCTATGTCAAGGAAAATCCCAGGTTAAGTTCACCAAGACCGGGGTATGTCATGGATTTGTGCTGTGGATTGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAGATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAGTAGGACCTCAAAGATCAAGAAATGTCCAAGCATGTTCTGCAGTTCTGGAAGCTTGTTTCAATCCATTACAGGGGGAACTCAAAATTATACTTGATTTCTTATGA 2187 0.4435 MISVFPKTLIATRFLSRTRPRIHTPKLTAIRTMSSSTQRMFQLKLDPITGNSEWVVIEDNDDGDESFAHNFHQPLLATTSYLDMLNDSPRNTAFRQAIQKTITKPCHVLDIGAGTGLLSMMAARAMGDEGRVTACESYLPMVKLMKKVLRINGMEGRVKVINKRSDELEVGLDIPSRADALVSEILDSELLGEGLIPTLQHAHDNLLVENALTVPYRATTYGQLVESTFLWQLHDLHSIEATVSDGIQLTPPGLDSVLSVKRQQYAMHCNPIQEEIKLLSEPFKIFEFDFWKRPESSGETELCVKATNDGRIHAVVSWWVLQLDREGTIYYSTAPRWISSPTITSPVGWCDHWKQCVWFVPGSGISIFKGEEIHLHATHTETSISYNLDTQVPTSEILNHRCMTGDLQLVLPPERVAIYGDKGWRLSMLKAVQSMLQGRDHPLCLVADDSVFLPLLVAQLSEASHVMSLLPGLKERGLQYLQAAAHANGLSRNCIEVLEKRVKQLTMHDIHQKKVDLLIAEPFYVGHDGMLPWQNLRFWKDRTTLNDILSEDALIIPSKGILRACAISLPDLWKSRCCLSNVEGFDHSVVNATLGACSNLPELEEGPCLPFFVWQCGEFDVLSETFDVMEFDFSKQICLCQGKSQVKFTKTGVCHGFVLWIDWVMDLQNSVVISTGPDRRYWKQGVKLLGTPRTVGPQRSRNVQACSAVLEACFNPLQGELKIILDFL* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0501 728 Gene3D - 561 727 - -
Gso5g0501 728 Gene3D Vaccinia Virus protein VP39 408 557 IPR029063 -
Gso5g0501 728 PIRSF Arg_N-mtase 38 727 IPR014644 GO:0006479|GO:0008168
Gso5g0501 728 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 35 669 IPR025799 GO:0016274|GO:0018216
Gso5g0501 728 CDD AdoMet_MTases 108 183 - -
Gso5g0501 728 Gene3D Vaccinia Virus protein VP39 74 216 IPR029063 -
Gso5g0501 728 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 7 35 669 - -
Gso5g0501 728 Gene3D - 217 402 - -
Gso5g0501 728 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 395 728 IPR025799 GO:0016274|GO:0018216
Gso5g0501 728 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 81 396 IPR029063 -
Gso5g0501 728 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 478 698 IPR029063 -
Gso5g0501 728 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 60 389 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0501 Gso-Chr5 5460371 5466695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0501 81 251 C2H2 Transcription Factor Family AT3G12270 29.947 5.23e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0501 K11438 - gmx:100785846 1487.63