Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0476 ATGTCATCCTCTTCCACCACATTATCACTGGACCACCTCCCTCCTTCCGAACAGCTATGTTATGTTCACTGCAACATTTGTGACACCGTCCTCGCTGTAAGTGTTCCTTGCACAAGCTTGTTCAAGACCGTCACAGTCCGATGCGGCCATTGCACTAACCTCCTCCCAGTGAACATGCGAGGGTTGCTTATGCCATCTCCCACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCTCATAACCTTCTGGAGGAGATACCAAATCCCTCTCCAAATTTTCTGATGAACCAAACAAATTTAAGTGCATCAAATGAGTTCTCTATGCCTGCTAGGATTGCAGCTGATGAGCTTCCACGACCGATCATGAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCAGCGTACAATCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCAAAGAATTGGGCTCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAGGAGGTTCTCATGAAAGATGGGTTTTATGCTTCGGCTAATGTTGGTGTCTCACCCTACTAA 645 0.4744 MSSSSTTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQTNLSASNEFSMPARIAADELPRPIMNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0476 214 Pfam YABBY protein 15 178 IPR006780 GO:0007275
Gso5g0476 214 PANTHER PROTEIN YABBY 6-RELATED 1 212 IPR006780 GO:0007275
Gso5g0476 214 SUPERFAMILY HMG-box 121 171 IPR036910 -
Gso5g0476 214 PANTHER PROTEIN YABBY 4 1 212 - -
Gso5g0476 214 Gene3D High mobility group box domain 119 175 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0476 Gso-Chr5 5073869 5077246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0476 26 212 C2C2-YABBY Transcription Factor Family AT4G00180 58.373 1.16e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso5g0476 YABBY 1.7e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0476 K25796 - gmx:100786175 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0476 5 5073869 5077246 Gso17g1167 17 11181146 11184764 GST