Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0473 ATGGATACATTTTCACATGTACCACCAGGCTTTCGGTTTCATCCAACCGATGAAGAGCTCGTTGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAACTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTACTTCTTCAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGGATGACAACAACGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCAAGGCGCAATATTTCTCAGACTTATGCATCATACCACCATCACCAACAACAGCACCACCACCATCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCGCAACTCGAAAGCCCCAAAGTTACTCAATCATCATGCTCAGTTGTCCCTTATGGCTATGAAAGCAACAACAACAACAATGGAAGCACCTTGCAATTCTCATCACTCACTCAGGAAGAACAGCTACAATATTGCAATAATCAACAAAGTCACCATTCTCTCTATGGTAGCAATGATCATGCAGTTGACCAGGTCACAGATTGGCGTGTGCTTGACAAGTTTGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTTTCCAAGGAAACCAGTTATTCCAATGCACCTATCTTCCATGTGGCTGAACAAATTTCTGTGGCTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGA 1095 0.432 MDTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTSQEEGWVVCRVFKKRMTTTQKVGEYDQSPCWYDEQVSFMQDLESPRRNISQTYASYHHHQQQHHHHPCKPELMELQYNNIPHDAFLQLPQLESPKVTQSSCSVVPYGYESNNNNNGSTLQFSSLTQEEQLQYCNNQQSHHSLYGSNDHAVDQVTDWRVLDKFVASQLSHNNQDVSKETSYSNAPIFHVAEQISVAANGSKKEQVSQEYASTSTSSYQIDLWK* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0473 364 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Gso5g0473 364 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Gso5g0473 364 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 353 - -
Gso5g0473 364 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Gso5g0473 364 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Gso5g0473 364 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0473 Gso-Chr5 5034497 5041140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0473 1 362 NAC Transcription Factor Family AT1G62700 58.128 1.37e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso5g0473 NAM 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0473 - - gmx:100783529 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0473 5 5034497 5041140 Gso17g1165 17 11154422 11160787 GST
Gso11g0270 11 2241671 2246071 Gso5g0473 5 5034497 5041140 PCT
Gso5g0473 5 5034497 5041140 Gso11g0270 11 2241671 2246071 PCT