Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0471 ATGGCCGAGGAAGCCAAAGCCAAAGGCAACGCGGCCTTCTCCGCCGGCGACTTCGCCGCCGCCGTCCGCCACTTCACGGACGCCATCGCCCTCTCCCCGTCGAGCCACGTCCTCTACTCCAACCGATCCGCCGCCCACGCCTCCCTCCAGAAATACGCCGAGGCCTTAGCCGACGCCCAGAAGACCGTCGACCTCAAGCCCGACTGGCCCAAGGCCTACAGCCGCCTTGGCGCCGCCCTCCTCGGCCTCCGCCGCCACCGCGACGCTGTCTCCGCCTACAAGACCGGCCTCCATCTCGACCCCGACAACGCCGCCCTCAAATCCGGCCTTGCCGACGCCCATGCCGCCGCCTCCCGCCCGCCCCCCACCAGCCCCTTCGCCACCGCCTTCTCCGGCCCCGACATGTGGGCCCGCCTCACGGCGGACCCCACCGCACGTGCCAACCTCCAGGACCCCGAGTTCGTCAAGATCATGCAGGACATCCAGAAGGACCCCAACAAGTTCAACCTGCATTTGAGTGATCAGAGGGTCATGCATGCCGTTGGGGTCTTGCTCAATGTCAAAATTCAAACCCCTAACGACGACAACGCCGACGCCGCCGGTGATGACGTGTCCGAGGATGACCCTGTATCCCAGTCCGAATCCGAATCCGAACCCGAACCGGAGCCTGAAGTGGCGGAGGAGGAGAAGGAGGCGAGGGATAGGAAAGGGCAGGCTCAGAAGGAGAAGGAAGCCGGCAATGCCGCTTACAAGAAGAAGGATTTCGAAACCGCGATTGGACATTACACCAAGGCTTTGGAGTTGGATGATGAGGATATTTCCTACCTTACTAATCGTGCCGCTGTTTACTTGGAGATGGGAAAGTTTGAGGACTGCATAAAAGATTGTGAAAAGGCTGTTGAGAGGGGAAGAGAACTAAGATCAGATTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGTACTGCATTGGCCAAAATGGCTAAATGCTCTAAGGATTTTGAACCTGCCATTGAGACTTTCCAGAAAGCACTTACAGAGCACCGCAACCCAGACACCTTGAAGAAACTGAACGAAGCTGAAAAGGCTAAGAAAGAACTAGAGCAACAAGAATATTTTGATCCAAAATTAGCTGATGAGGAGAGAGAAAAAGGAAATGAATTATTCAAGCAGCAGAAGTATCCTGAGGCTATTAAGCATTATACAGAAGCTATAAAAAGGAACCCAAAAGATGCTAAGGCTTACAGTAACAGAGCTGCATGCTATACGAAACTAGGGGCAATGCCCGAAGGTTTAAAAGATGCAGAGAAGTGCATTGAGCTTGATCCAACCTTTTCAAAGGGTTATACTAGGAAAGGTGCAGTGCAATTTTTCATGAAAGAATATGAAAAAGCTTTGGAAACATACAAGGAGGGTTTGAAACATGACCCTAACAATCAGGAATTGCTTAATGGCATAAGAAGATGTGTAGAACAAAACAATAAGGCTAGCCGTGGAGATTTTACTCCTGAGGAGTTAAAGGAGAGACAGGCCAAGGCAATGCAAGACCCAGAGATACAAAGCATTCTGCAAGACCCTGTTATGAGACAAGTATTGACTGATTTCCAGGAAAATCCCAGAGCTGCAGAGGAACATGCGAAGAATCCAATGGTGATGGACAAGATTCAAAAGCTGATCAGTGCCGGGATTGTCCAGATGAGATGA 1704 0.5205 MAEEAKAKGNAAFSAGDFAAAVRHFTDAIALSPSSHVLYSNRSAAHASLQKYAEALADAQKTVDLKPDWPKAYSRLGAALLGLRRHRDAVSAYKTGLHLDPDNAALKSGLADAHAAASRPPPTSPFATAFSGPDMWARLTADPTARANLQDPEFVKIMQDIQKDPNKFNLHLSDQRVMHAVGVLLNVKIQTPNDDNADAAGDDVSEDDPVSQSESESEPEPEPEVAEEEKEARDRKGQAQKEKEAGNAAYKKKDFETAIGHYTKALELDDEDISYLTNRAAVYLEMGKFEDCIKDCEKAVERGRELRSDYKMIARALTRKGTALAKMAKCSKDFEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNELFKQQKYPEAIKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFFMKEYEKALETYKEGLKHDPNNQELLNGIRRCVEQNNKASRGDFTPEELKERQAKAMQDPEIQSILQDPVMRQVLTDFQENPRAAEEHAKNPMVMDKIQKLISAGIVQMR* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0471 567 Gene3D - 497 567 - -
Gso5g0471 567 ProSiteProfiles TPR repeat profile. 378 411 IPR019734 GO:0005515
Gso5g0471 567 SMART CBM 132 171 IPR006636 -
Gso5g0471 567 SMART CBM 516 555 IPR006636 -
Gso5g0471 567 PANTHER TPR REPEAT CONTAINING PROTEIN 1 566 IPR045248 GO:0006457|GO:0030544|GO:0051879
Gso5g0471 567 Pfam TPR repeat 385 426 - -
Gso5g0471 567 Pfam TPR repeat 246 287 - -
Gso5g0471 567 Gene3D Tetratricopeptide repeat domain 236 372 IPR011990 GO:0005515
Gso5g0471 567 Pfam Tetratricopeptide repeat 7 68 - -
Gso5g0471 567 Pfam Tetratricopeptide repeat 76 120 - -
Gso5g0471 567 ProSiteProfiles TPR repeat profile. 239 272 IPR019734 GO:0005515
Gso5g0471 567 ProSiteProfiles TPR repeat profile. 412 445 IPR019734 GO:0005515
Gso5g0471 567 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 566 - -
Gso5g0471 567 ProSiteProfiles TPR repeat profile. 446 479 IPR019734 GO:0005515
Gso5g0471 567 Coils Coil 350 370 - -
Gso5g0471 567 SUPERFAMILY TPR-like 8 487 IPR011990 GO:0005515
Gso5g0471 567 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Gso5g0471 567 MobiDBLite consensus disorder prediction 199 225 - -
Gso5g0471 567 MobiDBLite consensus disorder prediction 192 248 - -
Gso5g0471 567 Pfam STI1 domain 508 559 IPR041243 -
Gso5g0471 567 Pfam STI1 domain 133 186 IPR041243 -
Gso5g0471 567 Pfam Tetratricopeptide repeat 447 479 IPR001440 GO:0005515
Gso5g0471 567 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Gso5g0471 567 SMART tpr_5 412 445 IPR019734 GO:0005515
Gso5g0471 567 SMART tpr_5 378 411 IPR019734 GO:0005515
Gso5g0471 567 SMART tpr_5 446 479 IPR019734 GO:0005515
Gso5g0471 567 SMART tpr_5 314 351 IPR019734 GO:0005515
Gso5g0471 567 SMART tpr_5 2 35 IPR019734 GO:0005515
Gso5g0471 567 SMART tpr_5 36 69 IPR019734 GO:0005515
Gso5g0471 567 SMART tpr_5 239 272 IPR019734 GO:0005515
Gso5g0471 567 SMART tpr_5 273 306 IPR019734 GO:0005515
Gso5g0471 567 SMART tpr_5 70 103 IPR019734 GO:0005515
Gso5g0471 567 Gene3D Tetratricopeptide repeat domain 376 491 IPR011990 GO:0005515
Gso5g0471 567 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Gso5g0471 567 Gene3D - 122 190 - -
Gso5g0471 567 MobiDBLite consensus disorder prediction 226 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0471 Gso-Chr5 5004138 5007978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0471 1 99 U-box Gene Family AT3G07370 33.333 2.69e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0471 K09553 - gmx:100780296 1033.48