Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0460 ATGAAGGAGGAAAGCATGGTAAAAGTAAAGGAGGAAATTGATTACAAAAGTTTATGTAGAAGGCTAGACAGAGAATTGGACAAACTCACTATGGAATATGAAAGGCAGCAGAAGGTATTTGAGGATGATATTGAAAGATTGACCACAGAAGCACAACATTGCATATTAGAGGCCCAACAGAATTATTCGGATTCGTTGGAGAAGGAAAGATTGAAATACCAGAAAGACTATAAAGAATCAATTAAGAGGCTTGAAGAGAAGGTAATGGAGAATAAAAAAAAGTACGAGGAATTTTGTATGACATCTACTGAAGAGGCCTTTGTTCCTGCTGAGGAAGTAGTCATTTTGAAAAAAATACTTCAGAGAGAGACCCTTTTGAGAAATGCTGCCGAAGGGGAGATAAATCATCTTAAAAATCAAATGGCAGAACTGAAAATGTTGGAGGCATCAAGAGAATCAGATATCTTAAAACTTCGTAAGATGTTGGAAGATGAGGCACATCAGAAAGAGAAATTCAAAGGAGAAATAGCAAGATTGCAAAGTCAATTGTTGCAATTAGGTTTTGAAGTTGGCAAAACAAAGCAACAACAGCAAGCTTCAGGAAATGGAGAGAAGGCCTCAGTTGCCAAGCTCTTTGAACAAGGGGGATTGCAGAAGATTTTGTCATTGCTTGAAGCAGAAGCTACTGATGCACGAATTAATGCTGTGAAAATAGTAGCAAATTTATCTTCTGAAGAAACAAATCAGAAGAAGATTGTAGAAGCAGGCGGACTTACGTCCTTGCTTACACTGCTTAAGAACTCACAAGATGAAACCACACAGAGAGTTGCAGCAAGCGCCATAGCAAATTTGGCAATGAATGAAACAAATCAAGATCTCATTGTGGCTCAGGGAGGCATTAATATACTGTCAATGACAGCAGCCAATGCCGAAGATCCTCAGACCCTTCGAATGGTTGCTGGAGCAATTGCTAATCTTTGTGGCAATGATAAACTGCAAATAAAGCTAAGGGGAGAAGATGGTATCAAGGCACTGTTGGGAATGGTCAGATGCAGACATCCTGATGTACATATTCAGATTGCCCGCGGAATTGCCAACTTTGCGAAGTGCGAATCAAAAGCATCTACACAAGGGACACAGGTTGGAAGGTCATTACTTATTGAGGATGGTGTGCTTCCATGGATAGTGCAAAACGCAAATAATGAAGTCTCGTTGGTTAGGCGTCATATTGAGCTTGCACTGTGTCATTTAGCACAACATGCAAATGCAAGAGACATGATTAGTGGAGGTGCAATATTAGAGTTGGTTCGTATATCGAGAGATTGTTCACGAGAAGACATAAGGATTCTTGCACGTAGAACACTAATCTCCAGCCCCGCATTCCAAGCTGAAATTAAGCGTTTGAAGATAGATTATTGA 1419 0.3989 MKEESMVKVKEEIDYKSLCRRLDRELDKLTMEYERQQKVFEDDIERLTTEAQHCILEAQQNYSDSLEKERLKYQKDYKESIKRLEEKVMENKKKYEEFCMTSTEEAFVPAEEVVILKKILQRETLLRNAAEGEINHLKNQMAELKMLEASRESDILKLRKMLEDEAHQKEKFKGEIARLQSQLLQLGFEVGKTKQQQQASGNGEKASVAKLFEQGGLQKILSLLEAEATDARINAVKIVANLSSEETNQKKIVEAGGLTSLLTLLKNSQDETTQRVAASAIANLAMNETNQDLIVAQGGINILSMTAANAEDPQTLRMVAGAIANLCGNDKLQIKLRGEDGIKALLGMVRCRHPDVHIQIARGIANFAKCESKASTQGTQVGRSLLIEDGVLPWIVQNANNEVSLVRRHIELALCHLAQHANARDMISGGAILELVRISRDCSREDIRILARRTLISSPAFQAEIKRLKIDY* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0460 472 Gene3D - 196 306 IPR011989 -
Gso5g0460 472 Gene3D - 307 465 IPR011989 -
Gso5g0460 472 PANTHER KINESIN-RELATED 1 196 IPR027640 GO:0003777|GO:0007018
Gso5g0460 472 PANTHER KINESIN-RELATED 194 464 IPR027640 GO:0003777|GO:0007018
Gso5g0460 472 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 256 299 IPR000225 GO:0005515
Gso5g0460 472 Coils Coil 19 50 - -
Gso5g0460 472 Coils Coil 162 182 - -
Gso5g0460 472 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 215 257 IPR000225 GO:0005515
Gso5g0460 472 SUPERFAMILY ARM repeat 206 455 IPR016024 -
Gso5g0460 472 Coils Coil 74 94 - -
Gso5g0460 472 SMART arm_5 329 369 IPR000225 GO:0005515
Gso5g0460 472 SMART arm_5 245 286 IPR000225 GO:0005515
Gso5g0460 472 SMART arm_5 287 328 IPR000225 GO:0005515
Gso5g0460 472 SMART arm_5 204 244 IPR000225 GO:0005515
Gso5g0460 472 Coils Coil 120 147 - -
Gso5g0460 472 Pfam Armadillo/beta-catenin-like repeat 248 285 IPR000225 GO:0005515
Gso5g0460 472 PANTHER KINESIN-LIKE PROTEIN KIN-UA 194 464 IPR033291 GO:0008017|GO:0032886|GO:0048364
Gso5g0460 472 PANTHER KINESIN-LIKE PROTEIN KIN-UA 1 196 IPR033291 GO:0008017|GO:0032886|GO:0048364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0460 Gso-Chr5 4891449 4896303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0460 213 327 U-box Gene Family AT1G23030 30.435 5.87e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0460 - - gmx:100806324 891.338