Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0459 ATGGATCCAATCTCGGCACATGGTCATTCCCTCCCCCCTCCTTTTCACACAAGAGATCTCCATCTGCATCACCAGCAACAACAACACCAGTTCCAAAGCTTAAACCAAGCCACCGAGGACGAGAACAGCGGCAGCAGCGGCGCGCAGAAAAGGGAACGCGAAGAAAATAGCAACAACAACGAAGGTGCAGGTGAGGCTGAGATAACAAGAAGACCTCGAGGAAGACCAGCAGGGTCCAAGAACAAGCCCAAGCCACCTATTATCATCACCCGCGACAGCGCCAACGCCATGAGAACCCACATGATGGAGGTGGCAGACGGATGCGACATCGTGGAAAGCGTGTCTGAGTTTGCCAGGAAGCGCCAGAGAGGGGTTTGCATCATGAGTGGCACTGGAACGGTCAACAATGTGACCCTCAGGCAACCGGCTTCGTCCGGTTCGGTTGTGACTCTTCACGGAAGGTTCGAGATCTTGTCCCTTTCGGGATCGTTCCTTCCACCACCTGCGCCGCCGGCTGCATCAGGTTTAACCATTTATTTGGCCGGTGGCCAGGGACAAGTGGTGGGAGGAAGTGTTGTTGGAACACTGGTTGCTTCAGGACCCGTGGTGATCATGGCCGCTTCGTTTAGCAACGCTGCTTATGAGAGGCTTCCTTTGGAGGACGAGGATCCTTCGCTGCAAATGCAAGGAGGTTCTATTGGGTCACCCGGTGCAAGTGGTGTTGGTCAGTCACAGCTTCTAGGAGGGGATGCAACTGCTCCACTTTTCCATGGTTTGCCTCCTAACCTTCTCAATTCTGTTCAAATGCCATCTGAGCCATTCTGGGCGGCATCTGCTCGCCCGCCTTTCTGA 852 0.5446 MDPISAHGHSLPPPFHTRDLHLHHQQQQHQFQSLNQATEDENSGSSGAQKREREENSNNNEGAGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVADGCDIVESVSEFARKRQRGVCIMSGTGTVNNVTLRQPASSGSVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPSLQMQGGSIGSPGASGVGQSQLLGGDATAPLFHGLPPNLLNSVQMPSEPFWAASARPPF* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0459 283 MobiDBLite consensus disorder prediction 45 74 - -
Gso5g0459 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 283 IPR014476 GO:0003680
Gso5g0459 283 PIRSF ESCAROLA 14 283 IPR014476 GO:0003680
Gso5g0459 283 CDD DUF296 98 209 IPR005175 -
Gso5g0459 283 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 211 IPR005175 -
Gso5g0459 283 MobiDBLite consensus disorder prediction 1 89 - -
Gso5g0459 283 Gene3D - 97 229 - -
Gso5g0459 283 ProSiteProfiles PPC domain profile profile. 94 230 IPR005175 -
Gso5g0459 283 MobiDBLite consensus disorder prediction 26 44 - -
Gso5g0459 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 283 - -
Gso5g0459 283 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0459 Gso-Chr5 4886403 4888349 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0459 1 283 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.627 6.28e-84 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0459 - - gmx:100807581 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0459 5 4886403 4888349 Gso17g1154 17 11048896 11050864 GST