Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0456 ATGGAGGCCAGTGGCGGTGTTAGCAGCGGCGTTACGGTGGTGGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACCGACAACCCGGCTCCCGCAAGCGGATCCACGACGCAGATTCCTGCGACGGCGGGGAGTGCTCTGTCGCCGTCACATCCGCCTCACACGGCGGCGATGGAGGCGTATCCGGCGACGATGCCAGCGAAGAAGAAGAGGGGCCGGCCGAGAAAGTACGCACCGGACGGGTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAGCTAGCTCCGTGAGCAAAGCCAAATTCGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACTCCCCATATCATCACTGTTAATTCTGGAGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGACCTCGAGCTATATGCATTCTTTCAGCTAATGGTGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACATATGAGGGACGGTTTGAGATTCTGTCATTGTCTGGCTCATTCATGCCCAATGAAAGTGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCTAGCCCTGATGGACGTGTTGTAGGTGGCGGAGTAGCTGGTCTGTTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACATGAGCAGAAGCCAAGAAAACAGAAACACGAGGTTATATCAAGTGTGACACCAGCTGCAGTTGTTCCAATCTCTACACTTGATCCAGTATCAATTCTATCAGCAGCGTCTTCCATCCGCAACGATAATTGGTCTGCTATGCCGGCAGAGGCCAAGGATAAGCCAGCTGACATTAACGTGTCGCTTCCTGCAGGGTAA 984 0.5295 MEASGGVSSGVTVVGSDAPSDYHVAPRTDNPAPASGSTTQIPATAGSALSPSHPPHTAAMEAYPATMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPASSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISSVTPAAVVPISTLDPVSILSAASSIRNDNWSAMPAEAKDKPADINVSLPAG* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0456 327 Gene3D - 144 276 - -
Gso5g0456 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 325 IPR039605 GO:0003680
Gso5g0456 327 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 257 IPR005175 -
Gso5g0456 327 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 260 - -
Gso5g0456 327 MobiDBLite consensus disorder prediction 1 84 - -
Gso5g0456 327 MobiDBLite consensus disorder prediction 31 51 - -
Gso5g0456 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 325 - -
Gso5g0456 327 CDD DUF296 143 234 IPR005175 -
Gso5g0456 327 ProSiteProfiles PPC domain profile profile. 139 281 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0456 Gso-Chr5 4830518 4835804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0456 1 324 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 59.280 4.76e-129 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0456 - - gmx:100801730 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0456 5 4830518 4835804 Gso17g1151 17 10996741 11002366 GST