Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0434 ATGGGAAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAGAAGCTCATCAAATTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCCGTGCCAAAGCTTGCTGGCCTCAGGCGCTGTGGCAAGAGTTGTCGCCTTCGTTGGACGAATTATCTTCGCCCAGACTTGAAGAGAGGGCTCCTCACAGAGGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCTGGAAGAACGGACAATGAGATTAAAAATCACTGGAACACCCATATCAAGAAAAAACTCCTTAAGATGGGTATCGATCCAGTTACTCACGAACCTCTCAATAAACAAGCTGCAGCATCTTCTCAGGATAGTTCATCCTCCCCTGCAGAGCATTTGCCACAACCTGGAAATAACCTTGATGATCAGGTAAAGGAAACTAATGGGGTTCTTCTCAACTCGGAGGAGAATTCAAGTTCATCACAAGCTGAAAATTCTTCTGGGGATGATTCACTTTTGCTAGAAAGCATTTGCAGTGATGACTCTCTGTTAAACAGCATGTGGCTGGATGAAACTCCTCTTGTGGAAGCATTATGGGACACAACACCTAACCTAGAGAACACTAACAATAACATGAGTTTGTTACCATCTTGGGAGGAAAATTGCGCTTGGTTATTGGACTGTCAAGACTTTGGTATTCATGATTTTGGGTTTAACGAGATAGAGGCAAATGCACTGCAAACTGTAGGAATGAAAGAAGAGGGGCATTAG 816 0.4571 MGRQPCCDKLGVKKGPWTAEEDKKLIKFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAAASSQDSSSSPAEHLPQPGNNLDDQVKETNGVLLNSEENSSSSQAENSSGDDSLLLESICSDDSLLNSMWLDETPLVEALWDTTPNLENTNNNMSLLPSWEENCAWLLDCQDFGIHDFGFNEIEANALQTVGMKEEGH* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0434 271 Gene3D - 71 146 - -
Gso5g0434 271 CDD SANT 16 61 IPR001005 -
Gso5g0434 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso5g0434 271 SMART sant 13 63 IPR001005 -
Gso5g0434 271 SMART sant 66 114 IPR001005 -
Gso5g0434 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso5g0434 271 Gene3D - 12 67 - -
Gso5g0434 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso5g0434 271 MobiDBLite consensus disorder prediction 130 158 - -
Gso5g0434 271 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso5g0434 271 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gso5g0434 271 CDD SANT 71 112 IPR001005 -
Gso5g0434 271 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 258 - -
Gso5g0434 271 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso5g0434 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso5g0434 271 PANTHER PROTEIN ODORANT1-LIKE 2 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0434 Gso-Chr5 4595258 4598747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0434 1 253 MYB Transcription Factor Family AT4G22680 59.559 3.26e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g0434 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0434 K09422 - gmx:100818077 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0434 5 4595258 4598747 Gso17g1130 17 10788822 10791095 GST