Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0423 ATGCAAGAAGCAGGGTTGGGAATGGGAATGGTGAGCGGAGAAGTGTCCGCCGCCGGCGACCACCATCACCACCACCGTCAAGTGAAGGCGGAGATAGCCACCCATCCACTCTATGAACAGCTTCTGTCTGCACACGTGTCATGCCTCCGCGTGGCCACACCCATCGATCAGTTGCCACTCATCGACGGTCAGTTATCGCAGTCCCACCATCTCCTCCGCTCTTATGCCTCACACCATTCCCATTCCCTCTCGCCCCATGACCGACAAGAACTTGACAACTTCATGGCACAGTATTTGATTGTGTTGTGTACATTTAAAGAGCAGCTTCAGCAACATGTGAGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAGTACCTTGCAAGCTCTGACAGGAGTCAGTTTGGGAGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGATTTGCAGATGGATGGCTCTTTAGACCAGTCTAGCGCTGAGGGACATGACTTAATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTGATGGAAAGAGTTCGTCAGGAGCTTAAGATTGAGCTCAAGCAGGGTTTTAAGTCTAGAATTGAAGATGTTAGGGAGGAAATATTAAGAAAACGGAGAGCTGGGAAATTGCCAGGCGACACAACATCGGTTTTAAAGGCCTGGTGGCAGCAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAATCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCAGTTACCTCTCTGAAGTCCAAGCGCAAGAGAGAGTATGCCCACTAA 882 0.4955 MQEAGLGMGMVSGEVSAAGDHHHHHRQVKAEIATHPLYEQLLSAHVSCLRVATPIDQLPLIDGQLSQSHHLLRSYASHHSHSLSPHDRQELDNFMAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGTGATMSDDEDDLQMDGSLDQSSAEGHDLMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKREYAH* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0423 293 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
Gso5g0423 293 SMART HOX_1 214 279 IPR001356 GO:0003677
Gso5g0423 293 Gene3D - 211 286 - -
Gso5g0423 293 Pfam KNOX1 domain 28 69 IPR005540 GO:0003677|GO:0005634
Gso5g0423 293 CDD homeodomain 215 276 IPR001356 GO:0003677
Gso5g0423 293 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Gso5g0423 293 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 4 289 - -
Gso5g0423 293 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Gso5g0423 293 Pfam KNOX2 domain 84 135 IPR005541 GO:0003677|GO:0005634
Gso5g0423 293 SMART KNOX2_2 81 136 IPR005541 GO:0003677|GO:0005634
Gso5g0423 293 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Gso5g0423 293 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 289 - -
Gso5g0423 293 SUPERFAMILY Homeodomain-like 214 279 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0423 Gso-Chr5 4467866 4474438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0423 1 288 Homeobox Transcription Factor Family AT1G62990 76.871 2.12e-165 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso5g0423 KNOX2 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0423 - - gmx:100803130 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0423 5 4467866 4474438 Gso17g1119 17 10678469 10684027 GST
Gso5g0423 5 4467866 4474438 Gso11g0235 11 1965927 1972064 PCT