Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0422 ATGGATCAAGACGACGACGAAGCAGGAACAACGAACCTCAGCACCAGCGACGCCGACGTGGCAGAGAAAGAAACCACAAACAACCTCAATGGAGTCCCCAAACAGAACAACGCGTTTGAAGAAACAACAGGTTTTCAAGTCTTGCCGCTGAAAAAGGAGGAGCCAACATATTCGGACCCTGACACGGAGATTGTTCCGGTCAAACTGCCAAAGCGCTCCTCCACGAAGGACCGCCACACCAAAGTGGAAGGGCGCGGCCGCAGGATCCGAATACCCGCCACCTGCGCCGCGCGGATCTTCCAGCTCACCCGAGAGCTCGGCCACAAGTCCGACGGCGAGACCGTCCGGTGGCTCCTGGAGCACGCCGAGCCGGCCATCATCGAGGCCACCGGCACCGGCACAGTTCCGGCCATCGCGGTCTCCGTCGGCGGCGCGCTCAAAATCCCAACCACCTCATCCAACTCCAACGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCAACAAGAAGCGGAAACGCCCCTCTAACAGCGAGTTCGTGGACATAAACATAAACATAAACGACGCCGTTTCAAAGTCGTCCGGTCTGGCCCCGGTTCATGTGCCGCAGGGCCTGGTCCCGGTCTGGGCCGTAAGTAACCCCAGCATGGTGATCCCCGCTAACACTTTCTGGATGATCCCTCAGGCCGCGACCACACCTAACCCCTCGGGTGGAGTAGCGGGCCCTGCAAGCCAGCAGCCTCAGTTATGGGCCTTATCTCCCTCCGTGTTCAACGTCGCCGCCAGGCCCATATCGCCTCTGGTTACAACCAATATTCCAGAAGCCCGGCCCGTTATGACGGCCTGCAGTAACGGTTCCAACTCCGCCGTTAGCACGAGCACGGTGGGGGCTAAGCTGGCAACGAAATCCAGCATGGCACCCAGTGTTAGTTCTAGCGGAACCAAGAGTGGCAAGACTCAAATGTTAAGGGATTTTTCGCTTGAAATTTGCGATAAACAAGAGTTACAGCTCTTGGGCCGCTCTGGGACTCACGCGCAGAGTTAG 1050 0.5914 MDQDDDEAGTTNLSTSDADVAEKETTNNLNGVPKQNNAFEETTGFQVLPLKKEEPTYSDPDTEIVPVKLPKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEPAIIEATGTGTVPAIAVSVGGALKIPTTSSNSNEEAAAAAAAAASSNKKRKRPSNSEFVDINININDAVSKSSGLAPVHVPQGLVPVWAVSNPSMVIPANTFWMIPQAATTPNPSGGVAGPASQQPQLWALSPSVFNVAARPISPLVTTNIPEARPVMTACSNGSNSAVSTSTVGAKLATKSSMAPSVSSSGTKSGKTQMLRDFSLEICDKQELQLLGRSGTHAQS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0422 349 MobiDBLite consensus disorder prediction 1 64 - -
Gso5g0422 349 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 347 IPR005333 GO:0003700
Gso5g0422 349 Pfam TCP family transcription factor 74 172 IPR017887 -
Gso5g0422 349 MobiDBLite consensus disorder prediction 8 43 - -
Gso5g0422 349 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
Gso5g0422 349 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 8 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0422 Gso-Chr5 4451948 4453395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0422 71 346 TCP Transcription Factor Family AT2G45680 47.419 2.88e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso5g0422 TCP 3.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0422 - - gmx:100797827 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0422 5 4451948 4453395 Gso17g1117 17 10655780 10657164 GST