Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0417 ATGGCATCATCATCATCATTATCATCATCAAAGAGGCATCCATTGTACCATGGAATCCGTTGCCGTGGAGGAAAATGGGTTACTGAAATCCGCGAACCGCGAAAAACAAACCGCATATGGCTGGGGACGTTCCTGACTCCGGAGATGGCGGCCGCAGCCTACGACGTGGCGGCGTTGGCCCTGAAAGGCGGCGAGGCGGTTCTCAACTTCCCTGACTCGGTTGGCGGGTATCCGGTGCCGGCATCCAAATCGCCTGCGGACATTCGCACCGCTGCCATTGCTGCAGCAGAACTCATGAAGCCTGAAGCAAGCCACAACAACAACAACGTTAATGCATCAACAACAAATGAGGCAGAAGTAGTTCAGTATGATAACAATAACGTTTTCACTTCGTTTGATACTGAGTTTATGGACGAGGAGGCCATATTTTCCATGCCAAGTTTGCTGGTCGATATGGCTGGGGGAATGTTGCTATCTCCTCCCAGAATGAGCCCTCCCTCCGATGACTCAACCCAAAGTTATGTTGGAGAAACTTTGTGGAACTTTTGA 549 0.5064 MASSSSLSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSVGGYPVPASKSPADIRTAAIAAAELMKPEASHNNNNVNASTTNEAEVVQYDNNNVFTSFDTEFMDEEAIFSMPSLLVDMAGGMLLSPPRMSPPSDDSTQSYVGETLWNF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0417 182 SMART rav1_2 15 77 IPR001471 GO:0003700|GO:0006355
Gso5g0417 182 Gene3D AP2/ERF domain 15 72 IPR036955 GO:0003700|GO:0006355
Gso5g0417 182 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677
Gso5g0417 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 182 - -
Gso5g0417 182 ProSiteProfiles AP2/ERF domain profile. 15 71 IPR001471 GO:0003700|GO:0006355
Gso5g0417 182 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Gso5g0417 182 PANTHER ETHYLENE RESPONSE FACTOR 2 182 - -
Gso5g0417 182 Pfam AP2 domain 16 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0417 Gso-Chr5 4403828 4405000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0417 10 182 AP2-EREBP Transcription Factor Family AT5G52020 51.705 1.96e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso5g0417 AP2 2.4e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0417 - - gmx:100793589 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0417 5 4403828 4405000 Gso17g1111 17 10600039 10601379 GST