Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0412 ATGTTGGCTGGGTGTTCTAGTTCGACATTGTTGTCACCGAGGCACAGATTGAGGAGCGAAGCATCAGCACAGTTTCAAGCCTGCCACTTCCAGCTACCTTCTTCCATGAGCACGCAGAGATTGGACCTGCCATGCACCACCACCACCTTCACTCGCAACAACAAAGACACCACCTCTTCACGCTCTGTTCTTTCAGTGGATCAGAAACCAATCGAAGCCAAGACCAGCACCTGTTCTCTCAAGCAACACATTCGACTCCCACCTCTGGCCATCACTGCAGCACCATCACCATTGGTGGAAGACTCCATCATCAAAGACAACACCAACAACAACAAGAGTTTGAAGAGGCTCGCGGCGGAGCACCAAGACGATTCCTTCACCAACAACATAGCCAAGAGGAAGAAAAAGAGTAGCAGCACTGAGTGTGATTGGTTTCAGCCTGATGTTGTTGGGACTACTTTAGGAGGATTTAACAATAACAACAATAACAACAACACTTCACTTGCTTCTTTCTCTTCAGAGGAAGACAGGGTTTGTTTTGTTCCTTCTGAAGTGGTTTCTCATTCTGCTCCTTTCCCTTTAAACCCTTGGCTGGAATCATGTGTTACAAAGATCACAAATTTCGGCGAGGGTAGCCAACGCCCTCACCACCACCACCACAGCGACCATGCCTCAGGCTCAGTCTCCAACGCTTCCTCGGAGAGCCAGAGCCTGAGGCTAAACGACAACATTTCAGAACACGAAGTGGGAAACGGTTCAGGGAACCCTTATTATCACCACGAGGTGGATACAGGGGAAGAAGACAACCACCACGGGTTCGAGCTCGTGAGTTTGCTCACCGGCTGCGTCGACGCCATTGGATCGAGAAACGTCACTGCAATCAACCACTTCATAGCAAAACTGGGTGATCTTGCTTCCCCCAAAGGAACAACCTCCATAAGCCGAATTTGTGCTTACTTCACAGAAGCATTAGCCATCAGAGTCACGAGGCTCTGGCCTCACGTTTTCCACATCACCACCACAAGCACTTCTCGCGACATGGTGGAGGACGATGAATCCGCTACTGCTCTGAGACTTCTCAACCAAGTAACCCCAATTCCCAAGTTCCTTCATTTCACATCAAACGAGATGTTGCTGAGGGCTTTTGAAGGCAAAGACAGGGTTCACATAATAGACTTCGACATCAAGCAAGGCCTTCAATGGTCAGGTTTGTTCCAAAGCCTAGCTTCGAGGTCCAACCCTCCGACCCACGTGAGAATCACTGGGATCGGAGAGTCAAAACAGGACCTCAACGAAACTGGCGAGAGGCTCGCCGGTTTCGCTGAGGCCTTAAACCTGCCCTTCGAGTTCCACCCTGTGGTGGACAGACTCGAGGACGTGAGGCTGTGGATGCTCCACGTGAAGGAGCACGAAACGGTGGCTGTGAACTGCGTTTTGCAGCTTCACAAGACACTCTACGACGGAAGCGGAGGAGCCTTGAGGGACTTCTTGGGTCTAATCCGCAGCACAAATCCCAGCGTTATCGTGGTGGCAGAGCAAGAAGCAGAACATAACGAAAACAGGTTGGAGGGAAGGGTGTGTAACTCGTTGAAATACTACTCGGCATTGTTTGATTCCATTGACGAGAGTGGGCTTCCGCAAGAGAGTGCGGTGAGGGTGAAAATAGAAGAGATGTATGCTAAGGAGATAAGGAACATTGTTGCTTGCGAAGGAAGGGAGAGGGTGGAGAGGCACGAGAGTTTCGGGAACTGGAGGAGGATGATGGTGGAGCAAGGAGGGTTCAGATGCATGGGTGTTACTGAAAGAGAATTGAGCCAGAGCCAGATGCTGTTGAAGATGTATTCTTGCGAGAGTTACAGTGTGAAGAAACAAGAGAAGGAAGGAGCAACAGGAGTTACACTTAGTTGGTTAGAGCAACCTTTGTACACTGTCTCTGCTTGGGGGCCTGTTGATGCTGCTGCGGGTACCTCGTCCTCGTTTTCTCAGCCAAGTTGA 1995 0.5028 MLAGCSSSTLLSPRHRLRSEASAQFQACHFQLPSSMSTQRLDLPCTTTTFTRNNKDTTSSRSVLSVDQKPIEAKTSTCSLKQHIRLPPLAITAAPSPLVEDSIIKDNTNNNKSLKRLAAEHQDDSFTNNIAKRKKKSSSTECDWFQPDVVGTTLGGFNNNNNNNNTSLASFSSEEDRVCFVPSEVVSHSAPFPLNPWLESCVTKITNFGEGSQRPHHHHHSDHASGSVSNASSESQSLRLNDNISEHEVGNGSGNPYYHHEVDTGEEDNHHGFELVSLLTGCVDAIGSRNVTAINHFIAKLGDLASPKGTTSISRICAYFTEALAIRVTRLWPHVFHITTTSTSRDMVEDDESATALRLLNQVTPIPKFLHFTSNEMLLRAFEGKDRVHIIDFDIKQGLQWSGLFQSLASRSNPPTHVRITGIGESKQDLNETGERLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEHETVAVNCVLQLHKTLYDGSGGALRDFLGLIRSTNPSVIVVAEQEAEHNENRLEGRVCNSLKYYSALFDSIDESGLPQESAVRVKIEEMYAKEIRNIVACEGRERVERHESFGNWRRMMVEQGGFRCMGVTERELSQSQMLLKMYSCESYSVKKQEKEGATGVTLSWLEQPLYTVSAWGPVDAAAGTSSSFSQPS* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0412 664 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 652 IPR005202 -
Gso5g0412 664 PANTHER SCARECROW-LIKE PROTEIN 28 6 652 IPR030027 -
Gso5g0412 664 MobiDBLite consensus disorder prediction 209 238 - -
Gso5g0412 664 Pfam GRAS domain family 275 647 IPR005202 -
Gso5g0412 664 ProSiteProfiles GRAS family profile. 266 648 IPR005202 -
Gso5g0412 664 Coils Coil 104 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0412 Gso-Chr5 4345421 4348898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0412 1 647 GRAS Transcription Factor Family AT1G63100 55.217 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso5g0412 GRAS 6.3e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0412 - - gmx:100786173 1290.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0412 5 4345421 4348898 Gso17g1105 17 10531148 10534613 GST