Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0408 ATGTCATCGTCATCATCAAGCAACGCCTACGACGTGCCATGGGTAGAAAAGTACCGTCCCAGCAAGGTCGCCGACATCGTCGGCAACGAGGACGCCGTCTCCAGGCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATTTTATCCGGTCCTCCCGGAACCGGCAAAACAACTAGCATTCTCGCCCTCGCGCACGAGCTTCTCGGAGGACCAAATTGCAAGGAAGCTGTTCTCGAACTAAACGCTTCGGATGATAGAGGAATTGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTCACACTGACCCCGGGGAGGCACAAGATAGTGATACTGGATGAAGCTGATAGCATGACCACAGGGGCACAACAAGCATTGAGAAGGACGATGGAGATATATTCAAACACCACTCGGTTTGCCCTTGCTTGCAATACCTCAGCTAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCACGGTTGTCTGATCAAGAGATACTTGGTCGTCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAAGCCATCATTTTCACAGCTGACGGTGATATGAGACAGGCATTGAATAACTTGCAAGCAACATACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTCAAGGTTTGTGACCAGCCACATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAATTTTGATGAAGCTTGTTCAGGCCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACGACACTCTTTCGTATAATAAAAAATTATGATATGGCCGAGTACCTGAAATTGGAATTCATGAAGGAAACTGGTTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGTTGTGTGGTCTATTGGCTAAGCTTTCTCTAGTTCGTGAGACAGCTAAAGCTGTATGA 996 0.4598 MSSSSSSNAYDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAV* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0408 331 Pfam ATPase family associated with various cellular activities (AAA) 48 167 IPR003959 GO:0005524|GO:0016887
Gso5g0408 331 PANTHER REPLICATION FACTOR C SUBUNIT 2 5 329 - -
Gso5g0408 331 CDD HLD_clamp_RFC 170 232 - -
Gso5g0408 331 Gene3D - 171 234 - -
Gso5g0408 331 SUPERFAMILY post-AAA+ oligomerization domain-like 234 325 IPR008921 GO:0003677|GO:0006260
Gso5g0408 331 Gene3D - 5 170 IPR027417 -
Gso5g0408 331 CDD AAA 27 165 - -
Gso5g0408 331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 329 - -
Gso5g0408 331 SMART AAA_5 44 171 IPR003593 -
Gso5g0408 331 Pfam Replication factor C C-terminal domain 235 320 IPR013748 -
Gso5g0408 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 232 IPR027417 -
Gso5g0408 331 Gene3D - 235 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0408 Gso-Chr5 4298804 4302290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0408 8 330 Core DNA Replication Machinery Family AT1G63160 91.641 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0408 K10755 - gmx:100781364 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0408 5 4298804 4302290 Gso17g1101 17 10493248 10496352 GST