Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0407 ATGGCCACGACAACAAGGTCACCGAATCGTTCCTCCGAGGACGCCGCCGATCCCACGCCGTTCCTCGGCACTTCTTCCGACGAATCCACCTCCGGCCGCCGCCTCCTCCGCCGCCCGAGTCTCCGCGAGGCTGCGCGCTTCCTGCGCCAGGCCAGCGGCCGCCGCCTCATGCGCGAGCCGTCCATGGTGGTGCGGGAGGCGGCGGCGGAGCAGCTCGAGGAGAGGCAGAGCGATTGGGCCTATTCCAAGCCCGTCGTCGTCTTGGACATTCTCTGGAACTTCGCCTTCGTCGCGGCCGCCGCAACCGTCTTCATTCTCAGCCGCAACGAGAATCCCAACATGCCTCTCAGGCTGTGGATTGTAGGCTACGCTCTGCAGTGCGTTCTTCACGTCGCGTGCGTCTGCGTCGAGTACCAGCGCCGCCTACGCCGCCGCGAACAGTCCAACGCCGCCGCTATCGCGGGTGGCGGCAGCGGAGATTTGGGTCCGCCTTCGATGGACGGCTCTGGACACTACGTGTCGTTGGCGCAGTTCGACGACGATGGTATAAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCGTTTATTTGGTGGGTTGTTGGATTCTATTGGGTGTCAGCTGATAGTGAATCTTTGGTCCGAGATTCTCCCCTGCTCTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATGGCACTAGCATGCATCGTTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAAGACATTGAGCAGTTGTCAAAATTCAAGTTCCAAAGAACTGAAACTAATGAGAAACTTGCTGGGAATACACAAGGAGCTGCTGGAGGAATAATGATTGAATGCGATGCTGATTCTCCCATTGAACATGTTCTTTCTGATGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGATGACGGGGTTGAACTTAGACAACTTCCTTGTGGCCACCATTTTCACTGTGCCTGTGTGGACAAATGGCTGCATATCAATGCTACATGCCCCCTCTGCAAGTACAACATCTTGAAAAGTACCAGTCATGCTCAAGACGAAGTGTAG 1143 0.5424 MATTTRSPNRSSEDAADPTPFLGTSSDESTSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNFAFVAAAATVFILSRNENPNMPLRLWIVGYALQCVLHVACVCVEYQRRLRRREQSNAAAIAGGGSGDLGPPSMDGSGHYVSLAQFDDDGISMAKHLESANTMFSFIWWVVGFYWVSADSESLVRDSPLLYWLCIAFLGFDVFFVVFCMALACIVGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRTETNEKLAGNTQGAAGGIMIECDADSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCACVDKWLHINATCPLCKYNILKSTSHAQDEV* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0407 380 MobiDBLite consensus disorder prediction 1 30 - -
Gso5g0407 380 Pfam Ring finger domain 324 366 IPR001841 -
Gso5g0407 380 PANTHER TARGET OF ERK KINASE MPK-1 3 380 - -
Gso5g0407 380 SMART ring_2 325 365 IPR001841 -
Gso5g0407 380 CDD RING-H2_RNF111_like 324 368 - -
Gso5g0407 380 MobiDBLite consensus disorder prediction 1 38 - -
Gso5g0407 380 ProSiteProfiles Zinc finger RING-type profile. 325 366 IPR001841 -
Gso5g0407 380 SUPERFAMILY RING/U-box 316 373 - -
Gso5g0407 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 373 IPR013083 -
Gso5g0407 380 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0407 Gso-Chr5 4288443 4293088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0407 19 375 C3H Transcription Factor Family AT1G68070 48.066 4.17e-114 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0407 - - gmx:100779757 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0407 5 4288443 4293088 Gso17g1100 17 10485226 10490528 GST
Gso5g0407 5 4288443 4293088 Gso11g0224 11 1850233 1855702 PCT