Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0401 ATGGCGTCTTTGCAGCACCCCACAGCTTCCCTCCAATCCAAACACGTCCTAATCCCCCGAAACACTCTTACCCAGAAACCCATCCTCAACCTCTCCTCCCTCCCGGGCACCACCTTCACCCCCCTCAAGCTCAAATTCTTCAGCGGCGGCGCCGTCCGCCGCTCCACCGGCGCCTCGGGAGCCAGAATGTCAGCCACCGCAGCCTCCAGCTACGCGGCTGCCCTGGCCGACGTGGCTGCCGCGAACAACACGCTCGACGCGACAACCGCGGACATCGAGAAAATCGACGAGATATTCTCGGAGGCGCAGGTGTCGGACTACTTCGCCAACCCCACCTTGGCCGTGGAGAAGAAGCGGAAGCTGATAGATGAGATTGCGGAATCTTCGGGGTTCCAGCCCCACACGAGAAACTTCCTCTACATCCTCGTGGACGCGCAGAGGATCGACCTCATCAACGAGATCGCAAAAGAGTTCGAATTGGTTTACAATTCCTTGACCGACACGGAGCTGGCGGTGGTGACGTCGGTGGTGAAGCTGGAGTCGCAGCACCTGGCGCAGATCGCGAAGCAGGTTCAGAAGCTCACTGGGACGAAGAACGTGAGGATTAAGACGCTACTTGACCCTAGTTTGGTCGCGGGTTTCACTGTCAGGTATTCCGGCTCCAAATTGATTGACATGAGTGTGAGAAAGCAGCTTGAGGATATTGCTGCTCAGCTTGAGTTGGGTGATATCTCTCTCGCCGTATGA 747 0.5743 MASLQHPTASLQSKHVLIPRNTLTQKPILNLSSLPGTTFTPLKLKFFSGGAVRRSTGASGARMSATAASSYAAALADVAAANNTLDATTADIEKIDEIFSEAQVSDYFANPTLAVEKKRKLIDEIAESSGFQPHTRNFLYILVDAQRIDLINEIAKEFELVYNSLTDTELAVVTSVVKLESQHLAQIAKQVQKLTGTKNVRIKTLLDPSLVAGFTVRYSGSKLIDMSVRKQLEDIAAQLELGDISLAV* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0401 248 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 64 166 IPR026015 -
Gso5g0401 248 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 200 219 IPR020781 GO:0015986|GO:0016020|GO:0046933
Gso5g0401 248 PRINTS ATP synthase delta subunit signature 67 86 IPR000711 GO:0015986|GO:0046933
Gso5g0401 248 PRINTS ATP synthase delta subunit signature 136 147 IPR000711 GO:0015986|GO:0046933
Gso5g0401 248 PRINTS ATP synthase delta subunit signature 147 161 IPR000711 GO:0015986|GO:0046933
Gso5g0401 248 PRINTS ATP synthase delta subunit signature 198 213 IPR000711 GO:0015986|GO:0046933
Gso5g0401 248 PRINTS ATP synthase delta subunit signature 214 232 IPR000711 GO:0015986|GO:0046933
Gso5g0401 248 PANTHER BNACNNG66500D PROTEIN 54 247 - -
Gso5g0401 248 Gene3D - 67 159 IPR026015 -
Gso5g0401 248 Hamap ATP synthase subunit delta [atpD]. 63 241 IPR000711 GO:0015986|GO:0046933
Gso5g0401 248 PANTHER ATP SYNTHASE DELTA CHAIN 54 247 IPR000711 GO:0015986|GO:0046933
Gso5g0401 248 Pfam ATP synthase delta (OSCP) subunit 68 239 IPR000711 GO:0015986|GO:0046933
Gso5g0401 248 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 68 239 IPR000711 GO:0015986|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0401 Gso-Chr5 4224781 4225828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0401 1 247 Primary Pumps ATPases AT4G09650 61.446 6.31e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0401 K02113 - gmx:100815063 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0401 5 4224781 4225828 Gso17g1096 17 10441745 10442737 GST