Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0394 ATGGTTTCGACGAGACGCAGTGGATCTGTCTCTGCCAAAAGATCTTCCTCCTCGGAAGATAAACCTCCTTCGCCGAAGCGCCAAAAGGTCGACAATGGCGGTTCGTCGGAGAAACCGGTGCCGACGCCGGCGGAAAATTCCAAGGACTTATCTACTCCGGAGCCCGTGCTTGATCCCGGAGAATGTGGCTCCGGCGAAGCTCAGATCGCCGGCGCGGTTGCCGACGATGGAGTGAGCTCCGGCAAGGGTGACGCTACGCCGGCTGTGCCTGTCACGGCGCCGATTGCTGATGCCGCATGTCCGTCGTTCTCTTCGTGGATTAATTATCAGAAACAAAATCCGAATATCGAAGGTGCGCCGTGGTGCAGGTTCTTGTCGCAGTCTGCACAGAATCCTAATGTTGCTATTTGCACACCCAATTTCACGATTGGTTCTAATAGAGGTTGCAACTTTCCACTGAATGATCAAACTATAAGTGGGAATTTATGCAGGATCAAACATACACAGGGCGATGGGAGTGCTGTAGCTGTGCTAGAAAGTATGGGTAGCAAAGGATCTGTGCTAGTAAATGGGACGCATGTCAAGAGGAATACCAGCTGTGTACTTACCTCGGGTGATGAAGTGGTTTTTGGTGTGCTTGGAAATCATTCTTATATTTTCCAGCAACTAAATACCGAGGTTGCTGTTAGGGGTGCAGAAGCTCAAAGTGGTATTGGGAAATTTCTGCCACTTGAAAGGAGAAGTGGAGACCCCTCAGCTGTGGATGGGGCCTCTATTTTGGCTTCTCTTTCCAACAGACAGGACCTTACAAGATGGAAATCTCCATCTCAGACCTCCAGTAAACCTCACCAGGGTACCGATGTCTCTAGTCGTACTGTTCATCATAATTGTACAGAAACTGAGCTTGATGGCTCAGAATCAACTCCAAATGTGCGGAGTGATAAAGCAGCAGATGTTCAAACAAGTGATAATAATTCAACAATGGATTGCAATCCAGATGCTGGTGCAGAGGCAGGCAATGCTAAAATCTATGGGGTATTGGAAGAAAGAAATGGGACACTGGATATGCAGGCTGCATCGACTTTGGGTACATCTGTGCGCTGTGCAGTGTTTAAAGAAGATGTAAATGCTGCGATACTGGATGGAAAAGAAATAGATGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAATACAAAAAATGTCCTGGTGGCTGCTTGCTTTATGCACCTCATGCATAAAGAACATGAAAAGTTTACTGCAGATCTTACAACCATAAACCCTCGTATTCTACTCTCTGGACCTGCAGGGTCTGAAATATATCAGGAGATGTTGGTAAAAGCACTTGCAAAATACTTTGGAGCTAAGCTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGACTTAATGCTGAAAAATCCTTCCGCTGCACTAAACTAAGTCCTACAGAAGACATGGCTAGGATCATGGATCCATTAGCTAGCGAAACAGAGACACCTAGCCCTTCAAATGCACCTACATCATATGGCTTTGAGTCTCAACCTAAGTTGGAAACCGATAACACGCCATCCACCTCTGGGACAGCTAAAAGTTGCTCATTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGCGTATATCAGACATCTCCAAGGGGACCGTCTAATGGAAGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACCGATCTTCGTTTGGAAAGCAGTGCTGTAGAAGAACTGGACAAATTACTTATTCATTCATTGTTTGAGGTTGTTTTTAGTGAGAGTAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCACATTCATTTAAAAGTAAGCTTGAAAATCTTCCGGATAATGTGGTCGTAATAGGTTCACACACACAAAATGACAGTCGCAAGGAAAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCAGATAGTTTTGGACGATTGCATGACAGGGGGAAGGAAGTCCCGAAACAAAATAGAACTTTGACCAAGCTTTTCCCAAATAAAATTACAATTCACATGCCACAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGATGTTGAGACTCTCAAAATCAAAGGAAATTTACATCACCTGCGCACAGTTTTGGGACGTTGTGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCAAAGCTTGCATTGTCCTGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAGTCTAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAGTGACATCGATGTTACTTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAACTTTTTTGCAAGGGGCAATTAACCAAGCCGTGCAAAGGAATCCTATTATTTGGTCCCCCTGGAACTGGTAAAACAATGCTCGCAAAGGCAATAGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGTATTACCTCTAAGTGGTTTGGGGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGAAGGAAACAGAGCGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTTGACGAGGCTGTCATAAGGAGGATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCGAAAATATTGAAAGTTATCCTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTGCTGCTGCTCTAGCAGAAGGCCAACCAGCTCCAGCATTATGCAGCAGTGGGGACGTTAGATCTTTAAACATGGAAGACTTTAAATATGCTCATCAGCAGGTATGTGCAAGTGTTTCTTCTGAATCAGTAAATATGACTGAGCTTTTACAATGGAATGAATTATATGGAGAAGGGGGTTCAGGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3591 0.4355 MVSTRRSGSVSAKRSSSSEDKPPSPKRQKVDNGGSSEKPVPTPAENSKDLSTPEPVLDPGECGSGEAQIAGAVADDGVSSGKGDATPAVPVTAPIADAACPSFSSWINYQKQNPNIEGAPWCRFLSQSAQNPNVAICTPNFTIGSNRGCNFPLNDQTISGNLCRIKHTQGDGSAVAVLESMGSKGSVLVNGTHVKRNTSCVLTSGDEVVFGVLGNHSYIFQQLNTEVAVRGAEAQSGIGKFLPLERRSGDPSAVDGASILASLSNRQDLTRWKSPSQTSSKPHQGTDVSSRTVHHNCTETELDGSESTPNVRSDKAADVQTSDNNSTMDCNPDAGAEAGNAKIYGVLEERNGTLDMQAASTLGTSVRCAVFKEDVNAAILDGKEIDVSFDNFPYYLSENTKNVLVAACFMHLMHKEHEKFTADLTTINPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKSFRCTKLSPTEDMARIMDPLASETETPSPSNAPTSYGFESQPKLETDNTPSTSGTAKSCSFKLGDRVKFSCSSSCGVYQTSPRGPSNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRSAPFILFMKDAEKSIVGNGDSHSFKSKLENLPDNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKQNRTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLALSCESIQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEGQPAPALCSSGDVRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSGVKKALSYFM* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0394 1196 Gene3D - 890 1171 IPR027417 -
Gso5g0394 1196 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 76 1196 - -
Gso5g0394 1196 MobiDBLite consensus disorder prediction 268 293 - -
Gso5g0394 1196 MobiDBLite consensus disorder prediction 302 331 - -
Gso5g0394 1196 Pfam FHA domain 142 211 IPR000253 GO:0005515
Gso5g0394 1196 SMART AAA_5 928 1065 IPR003593 -
Gso5g0394 1196 MobiDBLite consensus disorder prediction 508 543 - -
Gso5g0394 1196 MobiDBLite consensus disorder prediction 1 65 - -
Gso5g0394 1196 ProSitePatterns AAA-protein family signature. 1035 1054 IPR003960 GO:0005524|GO:0016887
Gso5g0394 1196 MobiDBLite consensus disorder prediction 1 18 - -
Gso5g0394 1196 Gene3D - 120 229 - -
Gso5g0394 1196 Pfam ATPase family associated with various cellular activities (AAA) 932 1061 IPR003959 GO:0005524|GO:0016887
Gso5g0394 1196 MobiDBLite consensus disorder prediction 268 334 - -
Gso5g0394 1196 SUPERFAMILY SMAD/FHA domain 108 221 IPR008984 GO:0005515
Gso5g0394 1196 MobiDBLite consensus disorder prediction 19 33 - -
Gso5g0394 1196 Coils Coil 852 872 - -
Gso5g0394 1196 Pfam AAA+ lid domain 1085 1120 IPR041569 -
Gso5g0394 1196 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 76 1196 - -
Gso5g0394 1196 MobiDBLite consensus disorder prediction 509 543 - -
Gso5g0394 1196 CDD FHA 141 221 IPR000253 GO:0005515
Gso5g0394 1196 CDD AAA 930 1063 - -
Gso5g0394 1196 Gene3D - 1064 1158 - -
Gso5g0394 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 890 1171 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0394 Gso-Chr5 4158253 4176266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0394 891 1139 Calmodulin-binding Proteins AT3G56690 39.453 2.23e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0394 - - gmx:100790427 2308.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0394 5 4158253 4176266 Gso17g1091 17 10372521 10384899 GST
Gso5g0394 5 4158253 4176266 Gso4g1646 4 46256053 46278652 PCT
Gso5g0394 5 4158253 4176266 Gso6g1444 6 14374802 14394693 PCT
Gso4g1646 4 46256053 46278652 Gso5g0394 5 4158253 4176266 PCT
Gso6g1444 6 14374802 14394693 Gso5g0394 5 4158253 4176266 PCT