Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0385 ATGGCGGCAGGGCGAAAAAGTGTTTCCCTGAGAAGAGAATTTTGCAAATATGGTTCCACCAAGGGGTTTGATCACCATACGAATGGTTCTTTCGGCGTGGAAGTGGGTGGTTCTCGCAACCATCACTTCGCTTGTTCAGGAGAGACGCGGTTCCATGTTGAAAAAGAGGAAGGTGAGATTTGTGTTGAACACGAGCTTGCCCCTGTGGTGCCACCGCCAGAGAAGAGAAGAAAGTTTTCTCCAATCATATGGGACCTAGCAGAGAAGGAAGAAAGAGTCTCTTCAAAGAGTGGGATCTTGCAGATTGCTGCTCTGTCTCCTCCTTGTCCATTTCTATCTAGCAGTCCTGGAGCCAATGGTGTTGATTGTGGGGATGTTATGGAGGAGCCTTTGACAGATTCGGGAAGCTACCCACACGATTTGGAGGAAGACAAAGATGTGCAAGGATGGACAATCACAAAGTCAAGATGGGCTTGTGATGTTCGTCCCTCACCAAGAGGTGCTGATGATGAACAGAAGCACGGCAAAGTGAGCTCCAGTCCTGAAATTGGTGAATTCCATGGCGGTGGAACTTCAGAGAGCACAATCACTAGATCATCAGGAAGTAGTGGTAGAGATCATTATTTGGGTGCTTCTTCTGATGACACTGATTCTGAAAAGGACTTCCTTATGGACTCCATGGTCAATGTTGAGGAACAAAGTGATGATGGTGATTCTCCATCAGATTCTGATGAGTGTGGTGGATTGATGCATGTGCTGAGAAACATAAACATGCTTCAGAGTTGCAGAAGTGTGTGTGAGTTTGAGATGATTAAGAAAATAAACGAAGGAACTTATGGTGTTGTCTACAAGGCTAGGGATAAGAAGACTGGAGAACTAGTAGCATTGAAGAAGGTGAAGATGAACATAGAGAGGGATGGATTTCCAATGTCATCCTTGAGAGAAATAAACATTCTCTTGTCTTTTAATCATCCCTCCATTGTGAATGTTAAAGAAGTAGTTGTTGATGATTTTGATGGTACTTTTATGGTAATGGAGCACATGGAGTATGACCTGAAGGGGCTGATGGAGGTTAAGAAGCATCCCTTTAGCATGAGTGAAATTAAATCCTTGGTACGGCAACTTCTTGAAGGTGTCAAGTATCTCCATGATAATTGGGTTATCCATAGGGACTTGAAATCATCAAACATCCTGCTGAACCATGATGGGGAGCTTAAAATATGCGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGAGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAATTAATTGCCAAGGAACCTCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTGATAAGATTTTTCGAACCCTGGGTACGCCTGATGAGAAAATTTGGCCAGGATTATCCAAATTACCTGGGGCTAAAGCAAATTTTGTTAAGCAACTGTTTAATACACTAAGGAAGAAGTTTCCAGCTGCGTCGTTTATTGGTTTGCCAGTTTTATCTGAGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCTCTTCCCAAATCTGATTTCAAGCCAATTTTTCCTTCTTGGCAGTGA 1731 0.4362 MAAGRKSVSLRREFCKYGSTKGFDHHTNGSFGVEVGGSRNHHFACSGETRFHVEKEEGEICVEHELAPVVPPPEKRRKFSPIIWDLAEKEERVSSKSGILQIAALSPPCPFLSSSPGANGVDCGDVMEEPLTDSGSYPHDLEEDKDVQGWTITKSRWACDVRPSPRGADDEQKHGKVSSSPEIGEFHGGGTSESTITRSSGSSGRDHYLGASSDDTDSEKDFLMDSMVNVEEQSDDGDSPSDSDECGGLMHVLRNINMLQSCRSVCEFEMIKKINEGTYGVVYKARDKKTGELVALKKVKMNIERDGFPMSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEHMEYDLKGLMEVKKHPFSMSEIKSLVRQLLEGVKYLHDNWVIHRDLKSSNILLNHDGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELIAKEPLFRGKSELEQLDKIFRTLGTPDEKIWPGLSKLPGAKANFVKQLFNTLRKKFPAASFIGLPVLSELGFDLLQQLLTYDPEKRITAEDALLHDWFHEAPLPKSDFKPIFPSWQ* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0385 576 PANTHER CELL DIVISION PROTEIN KINASE 68 576 - -
Gso5g0385 576 Gene3D Phosphorylase Kinase; domain 1 252 349 - -
Gso5g0385 576 PANTHER CYCLIN-DEPENDENT KINASE 68 576 - -
Gso5g0385 576 MobiDBLite consensus disorder prediction 163 180 - -
Gso5g0385 576 MobiDBLite consensus disorder prediction 190 209 - -
Gso5g0385 576 MobiDBLite consensus disorder prediction 121 219 - -
Gso5g0385 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Gso5g0385 576 Pfam Protein kinase domain 268 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0385 576 SUPERFAMILY Protein kinase-like (PK-like) 262 563 IPR011009 -
Gso5g0385 576 SMART serkin_6 268 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0385 576 MobiDBLite consensus disorder prediction 135 150 - -
Gso5g0385 576 Gene3D Transferase(Phosphotransferase) domain 1 350 568 - -
Gso5g0385 576 ProSiteProfiles Protein kinase domain profile. 268 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0385 576 CDD STKc_CDC2L1 262 558 IPR045267 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0385 Gso-Chr5 4056408 4060896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0385 263 564 Core Cell Cycle Gene Families AT5G10270 44.688 9.18e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Gso5g0385 Pkinase 5.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0385 K08818 - gmx:100788840 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0385 5 4056408 4060896 Gso17g1081 17 10273788 10278169 GST