Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0381 ATGGCAACCGGTTCCCGATTGTTCCTGATCCCCGCTGCGAGGCCCGTTCTCTGCAAAAACGTCTTCTTCATTTCCTCTTATTCTACTCGCACGCTCGAACTGTGCGAATCATCATCGTCTTCCTCTTCCTCTGCGCTCGCAGAGGAAGAGTCCCGAAACGTGAGGGTTTGGGCTTGGTGGGACGTCAAAAACTGCCACGTGCCCCCCAATTTCGACGCTTCCAAAGTTGCCCCCAAAATCATGGAGGCAGTGAGAGCCAACGGCATCAAAGGCCCTCTCAACATCACTGCCTTTGGCGACGTTCAGCTACTCACCCGGGCCCACCAGGAAGCACTCGCCTACACCGGCGTTCGCTTCACCCACGTTAACGATGGAAAGAGTAGTGCCGATATTCTTTTTGACTTAATGTATTGGGTTTCGCAAAACCCTCCACCCGCGCATATACTCTTGATATCCGGCGATAGAGACTTCGCCGGCGTGTTGCATAGGTTGAGAATGAGTAACTACAATGTCTTGCTCGCTACTCCAGAGAGCGCGCCTGGTGTTCTTCACAGTGCTGCCACGATAGCGTGGCAATGGTCTTCGATGCTCAAGGGAGAAAATCTTACTGGAAAATGTTTCAACCATCCACCTGATGGGCGGTATCGTTCTTGGTATGGAAGCTACAAGCTGACGGCTTGTCTTGAAAAGCCGGCTCCGGTTGTGGCTCAGGAGGCTTCTGCTGCTGCCTCTTTGCCCAATGTGGAGGCTTACGAGCCTTCTTCTTCGGGTTTGGGTTCGGTTCCGAAATCGGTTGTGAAGCAGGTTAGGCATATATTGAGTTTGCATCCAGAAGGGATAGGCATTAGTGTTCTTCGCGCCGAGTTGGCAAAGTGTGGTGTGCGTTTGGATAAAGGTTTCTTTGGACATAAAAGGTTTTCCCGCTTTCTGTTGTCGTTGCCACATGTACAGCTTCAGCCCAGTGGTGATGCTAATTTTTCTGTGCATTTGGTTCCTTGGGAATTCCCAGAACCTTGTGAGAGTATTCCTGTGGCATCAACAATGTCTGGTGCGAATAGTGAGGAGAAAGGAAGTGCAGCAACTCCAAAGGTAAACGGTGAGGATAAAAGAAAGGTTAGGGTTGCTGATGAGAAATTCTCAATCACCTCGATCCTTGAAAGGAGTTCGGATGACAATTTAAAGCCAGTCCAACCGGGGCTTTCACAAGGGAGATCCAATGAGGAATATATGGATGGTGAATCATCATCTCCTGTATTGGTTGAAAAACATGTTTGTCAGCCACCAAATGAGTTGCAGAAATCTTCTGTAGCTTCTGACAAGGTTGTGAATGTGGCTAATGCACAACAATCAGAGACTCAACTGCCACCCAAGGACAACAAAGATTCCGAAACGAAGATGGATTCCTTAAAAGTGACTTCTCAAAAATCGTCTGTTGAAGACATTGTTAGGTCTGAGGTTGCAAGTCATAAAAGTAAGGGAAAAAATGCAACTTCAGTGAATCACTCAGCTGGAAATGGTCAATCAATGGCGGAAGACTATGTTATCACAAATTATGAATCTGGAGATGTTGAAGCAGAGAACAAATATGAGGATCCAACTAGAATGGAGGTTGATGAAGTTGTTCACAGTCCATCTTCTTCACCAGTTGATGGCTCTCCAGTTGTCCAAACACCTGCTGGAAGTCCTGAAACTAATAACAGAAGTCCAACATTCTTTAGATGGATTAGAAGTTTGTGGCCATTTGGGAAAAGCAATGAAAAGTATGATGATTTGATCGCTAATCAGAACAAGCTGGTTAGCCATGTTGAGGATTCCAAGTTATCTGAACTGGACCCGACTGTTAGTCAATCTGAAGAGCCCAAGTTATCAGAACTGGATCAGAATGTTAGTTATGTTGAAGATTCCAAGTTATCTGAATTGGACCAGACTGTTAGGCAACTTGAAGAGCCCAAGTTAACAGAATTGGATCAGAGTGTTAGTCATTCTGGAAAGCCTGAGTTATTTTCTAGTGCTTCCTTTTGGAATGATATGGAATCTTTCATTTTTGCGCCCAAGGGATCACTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATGTGGTGCATAAATTACAAAATGGTGGACCCCTGGTTCTTAGATCACTCCCCAAAGAAGACTTCCTTCAATTGGTGGAATTGTTAATAACAGAGAAAAAATGGTTGGAGGAAAGCCCCTCCAAAACATTTCCTTTTAAGATAACTCAACCTGTTCAGAAGAATTCATTGGTGAAATCCCATGGTGCAAATGCTTTGAGATCTCTCTTTATAGGTAGAAGAACATCACAGTTGAACTTGCCAAAATCATTAGAACATGATGTGGAGAAACACAATCAGAGTATTTCTCTTGCTCGAGTTTCTGCACCGGCTACGGAAACAAAATATACTGAGCGATCTAGAAATGATATATTAGAAGACTGTAAAAAACTCGTGAGTGAGATACTGAGGGAACACCCGGAGGGGTATAATATTGGTGCTTTCGGAAGACTATTTGTTGATAGGTATGGCTATCATCTTGATATACAGAAGCTGGGTTATCAAAAGTTGGCAGCCTTGTTACAGATAATGCCTGGGGTTAAATTAGAGTCCACTTATATTTTTCCTTCTGTTCCTGCTGTCTGTGATTCTGACTTGGAAACTTCTATCCTCAAAACTCAAGCAACCACTGATATTCATGCAGCTTCCAACTCAGATAGTGAATTATCTGAGTCAGCCCCGAAAGATGATAACATGGAATCCCCATGGCAGGAGTTAGGTCCTGTTTCTTTGGATTTGAAGTCAAGTCAGAAAGCTATAGAACTGGATACATCAAAATCAAAGCATCTTGATTATGAACCTGTCGAATCAGATGATGAGTTTTCTGCATCTGAAGGAGATGGCTCTTGTTTAACTCAATCAGCAGAGCAAAGAAAGCCAAAATGTAATGAACAAGACAGTTCTTTTTGGCAAGTTATGGATTTGCGGCACAGTAGCAAGGAAAAAGAGAACAGTGGCAAGAAGTCAGACAATGTTGACAGCTTGGGCATTTCTCTGGCTGGAATTTTAGATTCATCCACTGAGTCAACTGGGGATACCCTTTCCGAAATTCCTTCATTGAAATACAGAGAGAATAATGGCAAGAAGTCAGACAATGTTGACAGCTTGGACGCTTCTCTGACTGATTTGTTTAATTCATCCACTGAGTCAACTAGGGGTACACTTTCCAAAATTCCTTCATCAAATTACAGAGAGAAGCAAAGGTCTCGTAAGAACTATTCCTTTGTTGCTGATCCAGTCTTACCTAACAAGGACAAGCTGGTTGATGACTTCAAGAACAAGAAAGCAAATGGGTCAAAGATGCAAAACTGA 3381 0.4377 MATGSRLFLIPAARPVLCKNVFFISSYSTRTLELCESSSSSSSSALAEEESRNVRVWAWWDVKNCHVPPNFDASKVAPKIMEAVRANGIKGPLNITAFGDVQLLTRAHQEALAYTGVRFTHVNDGKSSADILFDLMYWVSQNPPPAHILLISGDRDFAGVLHRLRMSNYNVLLATPESAPGVLHSAATIAWQWSSMLKGENLTGKCFNHPPDGRYRSWYGSYKLTACLEKPAPVVAQEASAAASLPNVEAYEPSSSGLGSVPKSVVKQVRHILSLHPEGIGISVLRAELAKCGVRLDKGFFGHKRFSRFLLSLPHVQLQPSGDANFSVHLVPWEFPEPCESIPVASTMSGANSEEKGSAATPKVNGEDKRKVRVADEKFSITSILERSSDDNLKPVQPGLSQGRSNEEYMDGESSSPVLVEKHVCQPPNELQKSSVASDKVVNVANAQQSETQLPPKDNKDSETKMDSLKVTSQKSSVEDIVRSEVASHKSKGKNATSVNHSAGNGQSMAEDYVITNYESGDVEAENKYEDPTRMEVDEVVHSPSSSPVDGSPVVQTPAGSPETNNRSPTFFRWIRSLWPFGKSNEKYDDLIANQNKLVSHVEDSKLSELDPTVSQSEEPKLSELDQNVSYVEDSKLSELDQTVRQLEEPKLTELDQSVSHSGKPELFSSASFWNDMESFIFAPKGSLLFSQSRSREDVVHKLQNGGPLVLRSLPKEDFLQLVELLITEKKWLEESPSKTFPFKITQPVQKNSLVKSHGANALRSLFIGRRTSQLNLPKSLEHDVEKHNQSISLARVSAPATETKYTERSRNDILEDCKKLVSEILREHPEGYNIGAFGRLFVDRYGYHLDIQKLGYQKLAALLQIMPGVKLESTYIFPSVPAVCDSDLETSILKTQATTDIHAASNSDSELSESAPKDDNMESPWQELGPVSLDLKSSQKAIELDTSKSKHLDYEPVESDDEFSASEGDGSCLTQSAEQRKPKCNEQDSSFWQVMDLRHSSKEKENSGKKSDNVDSLGISLAGILDSSTESTGDTLSEIPSLKYRENNGKKSDNVDSLDASLTDLFNSSTESTRGTLSKIPSSNYREKQRSRKNYSFVADPVLPNKDKLVDDFKNKKANGSKMQN* 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0381 1126 MobiDBLite consensus disorder prediction 603 624 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 390 416 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 609 624 - -
Gso5g0381 1126 ProSiteProfiles OST-type HTH domain profile. 814 888 IPR025605 -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 969 997 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 998 1012 - -
Gso5g0381 1126 CDD LOTUS 815 870 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 1028 1100 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 344 371 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 491 508 - -
Gso5g0381 1126 Pfam NYN domain 55 187 IPR021139 GO:0004540
Gso5g0381 1126 ProSiteProfiles OST-type HTH domain profile. 261 332 IPR025605 -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 390 412 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 948 1016 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 545 567 - -
Gso5g0381 1126 Gene3D - 809 876 IPR041966 -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 446 508 - -
Gso5g0381 1126 CDD PIN_limkain_b1_N_like 55 176 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 523 567 - -
Gso5g0381 1126 Pfam OST-HTH/LOTUS domain 263 324 IPR025605 -
Gso5g0381 1126 Pfam OST-HTH/LOTUS domain 814 873 IPR025605 -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 1028 1043 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 523 538 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 902 928 - -
Gso5g0381 1126 PANTHER EMB|CAB71880.1 21 1024 - -
Gso5g0381 1126 PANTHER LIMKAIN B LKAP 21 1024 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso5g0381 1126 MobiDBLite consensus disorder prediction 345 359 - -
Gso5g0381 1126 MobiDBLite consensus disorder prediction 1055 1085 - -
Gso5g0381 1126 Gene3D - 262 331 IPR041966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0381 Gso-Chr5 3991479 3995974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0381 47 199 C2H2 Transcription Factor Family AT5G61190 41.667 4.10e-33 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0381 - - gmx:106794208 2190.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0381 5 3991479 3995974 Gso17g1076 17 10227704 10231939 GST