Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0380 ATGGCCCCTCCTCCTTATAGTGCCTACAACGGAGAAATCGATGGGGAAAATCTACCTCTAGCTTTTGATATCTGGGAAAATCTATGGGCCTATGGCTATTACCCTCATCAACCTATTTCGGAGATCAATAGCACTTCTACATTGGTTGATTTCCCCTTTTGCGATGGCACCATCGTCAGGGATAACAAAAGGGTAAAGAGAACCGTGTGCTTCCCTATTTATAACAGCATTAATTGCCATAGTTTCTTCAACACCAACAACAGCAGTAGTAGGAATAGCATACCAAAGCTCCACTTCAGAGATCACATACGGACTTACACTCAAAGATATCTCGCAGCTGAACCCGTAGAAGATACAAACAGTTCAGAAAGTAGTGGAGGCGAAGAAGATGGGTGTGCAGATGGAGTGAGGCTTGTTCAGCTTCTAATAGCATGTGCGGAAGCGGTGGCTTGTCGTGACAAATCACACGCTTCCATATTACTATCCGAACTTAAAGCGAATGCTTTAGTGTTCGGATCCTCATTCCAAAGAGTTGCTTCCTGTTTCGTCCAAGGCCTGATCGAGAGGCTCAATCTGATTCAGCCCATCGGGCCTGCTGGCCCCATGATGCCCTCCATGATGAACATCATGGACGTGGCCTCAGACGAAATGGAGGAAGCATTCAGGTTGGTTTATGAACTGTGTCCGCACATCCAGTTCGGACACTATTTGGCTAATTCCACAATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTCCATGTCGTGGACCTAGGCATGAGCCTGGGTCTACGACACGGACACCAATGGAGAGGTCTGATCCAGAATCTTGCCGGTCGTGTAGGCGGCGAACGTGTTCGTCGCCTGCGGATCACGGGGGTGGGGCTCTGTGAGAGGCTTCAAACCATTGGAGAAGAACTCTCCGTTTATGCAAACAATTTGGGCGTCAACTTGGAGTTCTCCGTGGTGGAGAAGAATTTGGAAAATCTGAAACCAGAGGACATTAAAGTGAGGGAAGAAGAGGTTCTTGTGGTGAACAGCATTCTGCAGCTGCATTGCGTGGTGAAGGAAAGCCGCGGGGCTTTGAATTCGGTGCTGCAGATGATTCACGGGCTTGGACCCAAAGTGTTGGTGATGGTGGAGCAGGACTCGAGTCATAATGGACCCTTTTTTCTAGGGAGGTTTATGGAATCATTGCACTATTACTCTTCAATTTTTGACTCGTTGGATGTTATGCTGCCAAAGTATGACACTAAGAGGGCGAAGATGGAGCAGTTTTACTTTGCTGAGGAAATAAAGAACATTGTGAGTTGTGAGGGGCCTTTGAGGATGGAGAGACACGAGAGAGTGGACCAGTGGAGGAGGAGAATGAGCAGGGCTGGGTTTCAGGCTGCGCCTATTAAGATGGTGGCTCAGGCGAAGCAGTGGCTTCTCAAGAACAAGGTTTGTGAGGGGTATACTGTTGTGGAAGAGAAGGGGTGTTTGGTTCTTGGATGGAAATCGAGGCCTATTGTTGCAGTTTCTTGCTGGAAATGCTGA 1536 0.4798 MAPPPYSAYNGEIDGENLPLAFDIWENLWAYGYYPHQPISEINSTSTLVDFPFCDGTIVRDNKRVKRTVCFPIYNSINCHSFFNTNNSSSRNSIPKLHFRDHIRTYTQRYLAAEPVEDTNSSESSGGEEDGCADGVRLVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLIERLNLIQPIGPAGPMMPSMMNIMDVASDEMEEAFRLVYELCPHIQFGHYLANSTILEAFEGESFVHVVDLGMSLGLRHGHQWRGLIQNLAGRVGGERVRRLRITGVGLCERLQTIGEELSVYANNLGVNLEFSVVEKNLENLKPEDIKVREEEVLVVNSILQLHCVVKESRGALNSVLQMIHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSSIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKMVAQAKQWLLKNKVCEGYTVVEEKGCLVLGWKSRPIVAVSCWKC* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0380 511 Pfam GRAS domain family 138 510 IPR005202 -
Gso5g0380 511 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 83 510 IPR005202 -
Gso5g0380 511 ProSiteProfiles GRAS family profile. 129 510 IPR005202 -
Gso5g0380 511 PANTHER DELLA PROTEIN RGL1-LIKE 83 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0380 Gso-Chr5 3969759 3971750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0380 130 511 GRAS Transcription Factor Family AT1G66350 38.660 9.84e-77 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso5g0380 GRAS 4.3e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0380 - - gmx:100815959 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0380 5 3969759 3971750 Gso17g1075 17 10203806 10205787 GST