Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0372 ATGGAAGGCTCTGAATCCGATTCTGTGTCACTTTCCATTTCCAATGGCGAAGAGCCCCAATTGGGGCGACCTTCTTCCCCCGCCGCTCCTCCTGAGCCGTCAGATCTCAATCATGCGGCGGAGGAAGAGACACTCTCCGGGGAGCTTCAGAGCAAGTTGGATTTGAAGGATGTGGATGAAAGTGAGGAGAAAGTTTCGGACTTTAACGATGGTGGAGGAGTTTGTGATGAAGAAACTGGTAAGGGTGATGGAGATAGTAAGGGTTGGGAGACCAATAGTTGGAATGAGGAAGTGGGTGTTGATGTTGATGTTGATGGTGATGGTGATGGTGATGGTGATGATGATGTTGATGGTGATGTTGATGGTGATGATGAAGTGGAGAAGAAGGAAGGGAGAAACAGTGGTGGAACTCACCACTACCCTTTGAGGCCTGAAGCTGAGGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAATTGCAAGTTCAATCACCCCATTAAGAGGAAAAGTCAGGCTGTTAAAGAGAAGGCAGGAGAAAGAGAAGAAACCACAGAAAGATCAGGCATGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAATTTGGTAAATCTTGTAAATATAACCACACAAGAGGAAAAATTTCAACAGCACCAGCACCACTTTTGGAACTTAACTTTCTTGGCCTGCCTATTCGTCCGGGGGAAAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGCAAGTTTGGAGCAAACTGCAAGTTCAACCATCCTGATCCTACAGCTGTTGGAGGAGGAGGAGGTAATCCTCCTTCAGGGTATGGTAATGGAGGGTCTATTTCATTACAAGGTGTATCACAAACATCTGTACCCTCCTGGTCTTCTCCAAGAACATTAAATGAAGCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGATTGGAATGGATATCAGGCATCTGTCTACTTACCTGAGAGGAGCATTCATCCACCTTCTACATTTGTCATGAACAACCCAGCAATTGATACAAATGTTTACATGCACCATCAAAAGCAGATGCCTGTTGATGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTTCTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCCAAGAATCGGGTTACAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTACCTTTGAGACCTGACCAAAGTGTCTGCTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACTTGCAGCCCGTGATGATTCCTGGACTTGAGCAACAATCCTACTCAAACTCAGCTAGTGCTGGGGTGGCTGGGATAGGTGGAAGTACAGGCGTAACTGATGCGACAATTCAGCAATCTGTGTAA 1473 0.4508 MEGSESDSVSLSISNGEEPQLGRPSSPAAPPEPSDLNHAAEEETLSGELQSKLDLKDVDESEEKVSDFNDGGGVCDEETGKGDGDSKGWETNSWNEEVGVDVDVDGDGDGDGDDDVDGDVDGDDEVEKKEGRNSGGTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIKRKSQAVKEKAGEREETTERSGMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRPGERECPYYMRTGSCKFGANCKFNHPDPTAVGGGGGNPPSGYGNGGSISLQGVSQTSVPSWSSPRTLNEASPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERSIHPPSTFVMNNPAIDTNVYMHHQKQMPVDEFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRVTRLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPVMIPGLEQQSYSNSASAGVAGIGGSTGVTDATIQQSV* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0372 490 ProSiteProfiles Zinc finger C3H1-type profile. 238 266 IPR000571 GO:0046872
Gso5g0372 490 MobiDBLite consensus disorder prediction 280 303 - -
Gso5g0372 490 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 5 490 - -
Gso5g0372 490 SUPERFAMILY CCCH zinc finger 241 265 IPR036855 GO:0046872
Gso5g0372 490 SMART c3hfinal6 190 217 IPR000571 GO:0046872
Gso5g0372 490 SMART c3hfinal6 422 449 IPR000571 GO:0046872
Gso5g0372 490 SMART c3hfinal6 376 403 IPR000571 GO:0046872
Gso5g0372 490 SMART c3hfinal6 238 265 IPR000571 GO:0046872
Gso5g0372 490 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Gso5g0372 490 SUPERFAMILY CCCH zinc finger 193 220 IPR036855 GO:0046872
Gso5g0372 490 ProSiteProfiles Zinc finger C3H1-type profile. 422 450 IPR000571 GO:0046872
Gso5g0372 490 ProSiteProfiles Zinc finger C3H1-type profile. 376 404 IPR000571 GO:0046872
Gso5g0372 490 SUPERFAMILY CCCH zinc finger 381 405 IPR036855 GO:0046872
Gso5g0372 490 MobiDBLite consensus disorder prediction 270 303 - -
Gso5g0372 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 424 448 IPR000571 GO:0046872
Gso5g0372 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 169 IPR000571 GO:0046872
Gso5g0372 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 215 IPR000571 GO:0046872
Gso5g0372 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 240 264 IPR000571 GO:0046872
Gso5g0372 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 378 403 IPR000571 GO:0046872
Gso5g0372 490 MobiDBLite consensus disorder prediction 1 141 - -
Gso5g0372 490 MobiDBLite consensus disorder prediction 100 124 - -
Gso5g0372 490 SUPERFAMILY CCCH zinc finger 420 448 IPR036855 GO:0046872
Gso5g0372 490 PANTHER PROTEIN PHOSPHATASE RELATED 5 490 - -
Gso5g0372 490 Gene3D - 357 416 - -
Gso5g0372 490 Gene3D - 186 270 - -
Gso5g0372 490 Gene3D - 421 469 - -
Gso5g0372 490 MobiDBLite consensus disorder prediction 36 85 - -
Gso5g0372 490 MobiDBLite consensus disorder prediction 1 21 - -
Gso5g0372 490 ProSiteProfiles Zinc finger C3H1-type profile. 190 218 IPR000571 GO:0046872
Gso5g0372 490 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Gso5g0372 490 Gene3D - 120 182 - -
Gso5g0372 490 SUPERFAMILY CCCH zinc finger 142 171 IPR036855 GO:0046872
Gso5g0372 490 MobiDBLite consensus disorder prediction 125 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0372 Gso-Chr5 3911597 3916167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0372 137 480 C2H2 Transcription Factor Family AT3G02830 39.782 3.61e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso5g0372 zf-CCCH 7.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0372 - - gmx:100786894 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0372 5 3911597 3916167 Gso17g1068 17 10143573 10148248 GST
Gso5g0372 5 3911597 3916167 Gso4g1620 4 45899783 45905506 PCT
Gso5g0372 5 3911597 3916167 Gso6g1466 6 14714910 14721237 PCT
Gso4g1620 4 45899783 45905506 Gso5g0372 5 3911597 3916167 PCT
Gso6g1466 6 14714910 14721237 Gso5g0372 5 3911597 3916167 PCT