Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0371 ATGGCTTCGAGCGAGGGGTTTCTGACCGATGGCCAGAGGGAACTGCTAAAAATTGCAAGTCAAAATGCGGAGAATCTGTCTTCGTCGCCGAAGTCTCAGTCGTCCTTGCTGTCTGACCATCATGTGAAAGCCCCTGCTGGTGGTAAGGCACAAACCGCTGGAATAGCTGTGAGGCATGTGCGTCGGTCACACTCGGGAAAGTATGGGAAGGTGAAGAAGGATGGTGCTGGTGGTAAGGGTACTTGGGGAAAATTGCTTGATACAGATATTGTTTCTCACATAGACCGGCATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAGCTGGTTGGAACTACTGTCACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAATATTTCAGTAATGGAGATGTGGAATTGGCTTCATCTGACCTCAAAGAACTTGGCTCATGTGAATACTATCCTTACTTCATTAAGCGCCTTGTGTCCGTGGCAATGGACAGACACGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCACTTTATGCTGATGTCATCAGCCCTGCACAGATTAGGGATGGGTTTTTTATACTTCTTGAATCTGCTGATGATCTTGCTGTGGATATACTGGATGCAGTTGACATCCTTGCATTATTCTTAGCTCGAGCTGTTGTTGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCTAAGAAGGCTCTTCCAGAATCTTCCAAGGGAGTTCAGGTAATCCAGACTGCTGAAAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATAACCGTTGAAGAAGTGAAGAAGAAGATAGCTGATTTACTTAGAGAATATGTGGATAGTGGTGACACATTGGAAGCCTGTAGGTGTATACGTGAGTTGGGGGTTTCATTCTTCCATCATGAGGTTGTTAAGAGGGCTCTGATACTTGCCATGGAGATACGTTCCGCAGAACCTCCAATGTTGAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTGGTTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAATCCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAGGCATTGTTTCAGTCATTTGTCCCCAAGGCAATATCTGAAGGATGGCTTGATGCTTCACTTACCAAACCTGCAACTGAAGATGGGGAAATCCAAGAAGATGAGAAGGTGAGGAAGTACAAAAAGGAATCTGTAACTATAATTCATGAGTATTTTCTTTCTGATGACATTCCTGAACTGATTCAAAGTCTTGAAGATCTTGGAGCACCTGAGTATAACCCAATATTTTTGAAGAAGCTTATCACTCTTGCTATGGACCGAAAGAACAGAGAAAAGGAAATGGCATCTGTACTGCTATCTGCTCTTCATATAGAGATCTTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAGTGCTGAAGATACAGCACTGGATATATTGGATGCTTCAAATGAGCTGGCTCTGTTCTTAGCTCGGGCTGTTATTGACGATGTATTGGCCCCACTGAATTTGGAAGAAATTGGCTGCAGGTTACCACCAAAATGCAGTGGTAGTGAAACTGTGCGTATGGCTCGGTCACTCATTGCTGCTCGTCATGCTGGTGAGAGGCTATTGAGATGCTGGGGTGGAGGCACTGGATGGGCTGTGGAGGATGCCAAGGACAAGATCATGAAGCTCTTGGAAGAGTATGAAAGTGGCGGGGTTGTGAGTGAAGCTTGCCAATGCATCCGTGACCTGGGAATGCCTTTCTTTAACCATGAAGTAGTGAAGAAAGCTTTGATTATGGCCATGGAGAAAAAGAATGATCGTATGCTAGATCTACTGCAGGAGTGCTTCAGTGAAGGCCTGATCACCATTAATCAGATGACTAAAGGCTTCACCCGAATAAAGGATGGACTTGATGATCTGGCTCTGGACATTCCAAACGCAAAGGAGAAATTTGGCTTCTATGTGGAGCATGCTCAGTCGAATGGCTGGCTTCTACCCTCATTTGATTCACCTGCCACAGATGCCTAA 2106 0.4506 MASSEGFLTDGQRELLKIASQNAENLSSSPKSQSSLLSDHHVKAPAGGKAQTAGIAVRHVRRSHSGKYGKVKKDGAGGKGTWGKLLDTDIVSHIDRHDPNYDSGEEPYQLVGTTVTDPLDEFKKAVVSIIEEYFSNGDVELASSDLKELGSCEYYPYFIKRLVSVAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFILLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAKKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALILAMEIRSAEPPMLKLLKEAAEEGLVSSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASLTKPATEDGEIQEDEKVRKYKKESVTIIHEYFLSDDIPELIQSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGCRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDRMLDLLQECFSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFGFYVEHAQSNGWLLPSFDSPATDA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0371 701 SUPERFAMILY ARM repeat 282 403 IPR016024 -
Gso5g0371 701 SUPERFAMILY ARM repeat 416 574 IPR016024 -
Gso5g0371 701 ProSiteProfiles MI domain profile. 581 700 IPR003891 -
Gso5g0371 701 Pfam MA3 domain 286 397 IPR003891 -
Gso5g0371 701 Pfam MA3 domain 122 233 IPR003891 -
Gso5g0371 701 Pfam MA3 domain 420 529 IPR003891 -
Gso5g0371 701 Pfam MA3 domain 583 690 IPR003891 -
Gso5g0371 701 Gene3D - 409 561 - -
Gso5g0371 701 Gene3D - 114 262 - -
Gso5g0371 701 MobiDBLite consensus disorder prediction 19 38 - -
Gso5g0371 701 SUPERFAMILY ARM repeat 119 279 IPR016024 -
Gso5g0371 701 ProSiteProfiles MI domain profile. 285 406 IPR003891 -
Gso5g0371 701 ProSiteProfiles MI domain profile. 418 539 IPR003891 -
Gso5g0371 701 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 693 - -
Gso5g0371 701 SMART ma3_7 122 233 IPR003891 -
Gso5g0371 701 SMART ma3_7 286 397 IPR003891 -
Gso5g0371 701 SMART ma3_7 582 691 IPR003891 -
Gso5g0371 701 SMART ma3_7 419 530 IPR003891 -
Gso5g0371 701 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Gso5g0371 701 PANTHER PROGRAMMED CELL DEATH 4 1 693 IPR039778 GO:0045892
Gso5g0371 701 SUPERFAMILY ARM repeat 578 695 IPR016024 -
Gso5g0371 701 Gene3D - 569 696 - -
Gso5g0371 701 Gene3D - 272 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0371 Gso-Chr5 3902621 3908287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0371 585 681 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 8.81e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0371 - - gmx:100784244 1325.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0371 5 3902621 3908287 Gso17g1067 17 10135135 10139855 GST