Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0370 ATGGCCACCACTTTTCTTTCTCTCCTCTTCCTCATCTTCTCTCTCCTCACCCCAACCCTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTTGTGGCCCAAGAAATTAACAGGAAAATCAATGCTTCCGTAGCTAGAAGGAATTTGGGGTACTTGTCCTGTGCGACAGGGAACCCCATTGACGATTGTTGGAGGTGTGACCCGAACTGGGAGAAGAACCGCCAGAGGCTAGCGGATTGTGCGATTGGTTTCGGGAAAAACGCCATCGGAGGAAAGAACGGAAAAATCTACGTGGTGACCGATTCCGGCGACGACGATCCGGTGACACCGAAGCCGGGAACCCTCCGGTACGCAGTTATTCAAGACGAGCCTCTCTGGATCATCTTCGCAAGAGACATGGTGATCAAGCTGAAGGAGGAGCTCATCATGAACTCCTTCAAGACCATCGACGGAAGAGGCGCCAGCGTGCACATTGCGGGTGGTCCATGCATAACGATACAGTATGTGACCAACGTTATAATCCATGGGATAAACATTCATGACTGTAAGCAAGGTGGGAATGCTATGGTGCGGGACTCCCCACGGCACTACGGCTGGAGGACCGTGTCGGACGGTGATGGCGTGTCGATCTTTGGAGGGAGCCACGTGTGGGTTGACCATTGCTCTTTGTCTAACTGCAATGATGGGTTGATCGATGCCATTCATGGCTCTACCGCGATTACCATCTCCAACAATTACATGACTCACCATGACAAGGTCATGCTTTTGGGCCACAGTGATTCCTACACTCAGGACAAGAACATGCAGGTTACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAATCCTACCATCAATAGCCAAGGCAACAGGTTTGTTGCACCTGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCAGCAGAGAGTGAATGGAAGGGGTGGAATTGGAGGTCAGAAGGGGACTTGTTAGTAAACGGTGCGTTTTTCACGGCATCGGGGGCTGGAGCCTCCTCTAGTTATGCAAGAGCTTCTAGCTTGAGTGCAAGGCCATCTTCACTGGTGGGGTCCATAACCACTGGTGCGGGTGCACTCACCTGTAGGAAGGGTTCCCGCTGCTGA 1221 0.5086 MATTFLSLLFLIFSLLTPTLISSSPVQDPEFVAQEINRKINASVARRNLGYLSCATGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAAESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALTCRKGSRC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0370 406 PANTHER PECTATE LYASE 1 403 - -
Gso5g0370 406 SMART amb_all 132 329 IPR002022 -
Gso5g0370 406 Gene3D - 57 399 IPR012334 -
Gso5g0370 406 PANTHER PECTATE LYASE 18-RELATED 1 403 IPR045032 GO:0030570
Gso5g0370 406 SUPERFAMILY Pectin lyase-like 40 401 IPR011050 -
Gso5g0370 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Gso5g0370 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Gso5g0370 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Gso5g0370 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Gso5g0370 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Gso5g0370 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Gso5g0370 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Gso5g0370 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Gso5g0370 406 Pfam Pectate lyase 139 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0370 Gso-Chr5 3869698 3871849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0370 1 406 Polysaccharide Lyase AT5G63180 79.462 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0370 K01728 - gmx:100779940 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0370 5 3869698 3871849 Gso4g1611 4 45765647 45768123 PCT
Gso5g0370 5 3869698 3871849 Gso6g1473 6 14839390 14842119 PCT
Gso4g1611 4 45765647 45768123 Gso5g0370 5 3869698 3871849 PCT
Gso6g1473 6 14839390 14842119 Gso5g0370 5 3869698 3871849 PCT