Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0369 ATGGCTCCCCAAACCATTTCCATTCACTACCACACCACCCGCTTCTTACCTCAACCCGATGTCTTCATTCGCACTTCCCACGGAACACGCATTCCAGCCCACGCCGGCATTCTGGCTTCCATGTCCCCTGTTTTTGACAACTTTATAGATCGCCCTCGTAAGCATCGGAGCTCCGAGAGAATTATCCAAATCCACGGCGTCCCCTGCGACGCCGTCACCGCCTTCGTCGGATTCCTCTACTCCTCCAGGTGCACGGAGGAGGAGATGGACAAGTACGGGATGCACCTTCTTGCATTGTCGCACGTGTACATGGTGCCGCAGCTGAAGCAGAGGTGCATCAAGGGTTTGACCCACCGCTTGACCACGGAGAACGTGGTGGACGTGCTTCAACTCGCGCGTCTCTGTGACGCGCCGGATCTCCATCTTCGCTGCATGAAGCTCCTCGCCAACAATTTCAAAGCGGTGGAAGCAACGGAGGGGTGGAAGTTCCTCGTCAAACACGACCCCTGGCTCGAACTCGACATTCTCCGCTTCATCGACGAACACGAAACCAGGAAAAAGAAATCGAGGAAGTATAGGATGGAACAGGGGCTATACGCGGAGCTGAGCGAGGCGATGGAGTGTTTGGAGCACATATGCTATGATGGGTGTACCCACGTTGGACCGTACGATGCTGCGGAGGAGAAGAGGGAGAGGACGCCGTGTGGGAGATTCGCCACGTGCCAGGCTCTTCAGGTTCTGATCCGCCACTTTGCCACGTGCGAGAAGAAGGTGCGCGGCGGCTGCGTGCGGTGCAAGCGAATGTGGCAGCTCTTTCGACTCCATTCCTATGTTTGTCACCACACCGATTCCTCCTGCAAGGTTCCTTTTTGCAGGCAATTTCAATTGAGAATGCAGCAAGAGAAACGGAAAGATGATGCTAAGTGGAAACTACTAGCGAGGAAGGTGGCCTCAGCCAAAGTCATGTCTTCATTGTCTCTGCCAAAGAGGAAGCGAGATGAAGAAACAAGAGTGAATATAAACAATCCCGGGATTAGAAGTTTTAAATTACTATGA 1056 0.535 MAPQTISIHYHTTRFLPQPDVFIRTSHGTRIPAHAGILASMSPVFDNFIDRPRKHRSSERIIQIHGVPCDAVTAFVGFLYSSRCTEEEMDKYGMHLLALSHVYMVPQLKQRCIKGLTHRLTTENVVDVLQLARLCDAPDLHLRCMKLLANNFKAVEATEGWKFLVKHDPWLELDILRFIDEHETRKKKSRKYRMEQGLYAELSEAMECLEHICYDGCTHVGPYDAAEEKRERTPCGRFATCQALQVLIRHFATCEKKVRGGCVRCKRMWQLFRLHSYVCHHTDSSCKVPFCRQFQLRMQQEKRKDDAKWKLLARKVASAKVMSSLSLPKRKRDEETRVNINNPGIRSFKLL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0369 351 Gene3D TAZ domain 194 320 IPR035898 -
Gso5g0369 351 CDD BACK 121 168 - -
Gso5g0369 351 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 1 349 - -
Gso5g0369 351 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 1 349 IPR044513 -
Gso5g0369 351 SUPERFAMILY POZ domain 20 150 IPR011333 -
Gso5g0369 351 ProSiteProfiles BTB domain profile. 19 88 IPR000210 GO:0005515
Gso5g0369 351 SMART TAZ_2 196 292 IPR000197 -
Gso5g0369 351 SMART BTB_4 19 120 IPR000210 GO:0005515
Gso5g0369 351 SUPERFAMILY TAZ domain 195 300 IPR035898 -
Gso5g0369 351 Pfam TAZ zinc finger 203 291 IPR000197 -
Gso5g0369 351 Gene3D - 121 193 - -
Gso5g0369 351 Gene3D Potassium Channel Kv1.1; Chain A 15 120 IPR011333 -
Gso5g0369 351 Pfam BTB/POZ domain 19 118 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0369 Gso-Chr5 3853905 3857413 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Gso5g0369 BTB 3.8e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0369 - - gmx:100807120 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0369 5 3853905 3857413 Gso17g1066 17 10087665 10090850 GST
Gso5g0369 5 3853905 3857413 Gso4g1609 4 45735707 45738465 PCT
Gso4g1609 4 45735707 45738465 Gso5g0369 5 3853905 3857413 PCT