Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0363 ATGTCTATGATGTCTCTCACAACCGTGGCTGCATTCAAGTCCCTCACAATGGCGGAATCGTGCCTTCTATCCCTCCCTTCCCTCTTCTACGCCAAAAACAATACCCTTTCTCTCTCAATTCCCACCAAGCCCCTCAACCTCCATCTTCCATGCTCCAACTCTTCGCTCTTTCCCCTCACCACCAAAACAACGCGCCACTCTTCTCTCCTCACATTCGTGGCTCAGACATCGGATTGGGCCAAAGAAGAAGAGGAAGAAGAAACCTCGTGGGAGAACCAAGGCGACACCGCGTGGGGAACTGAAGAAGGTGGCCACGAAGAAGGGGGTTTCGCTGAAAAAGCTGAGGAAGATAAGATCTTCGTTGGGAACTTGCCTTTCGACATCGACAGCGAGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACCATGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCCCACCACGCCCACCACGTTCCTTTAGTTCTGGTTTAAGAGTCTATGTTGGCAACTTGCCATGGGAAGTTGACGATGCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGGATGCTCGGGTGGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGTCTAGTGAGACTGATATGAATGATGCAATTGCTGCCCTTGATGGTCAGAGTTTGGACGGGAGGGCTATCAGAGTGAATGTTGCACAGGATAGGCCTAGCCGCAGCTCTTTTTGA 900 0.5011 MSMMSLTTVAAFKSLTMAESCLLSLPSLFYAKNNTLSLSIPTKPLNLHLPCSNSSLFPLTTKTTRHSSLLTFVAQTSDWAKEEEEEETSWENQGDTAWGTEEGGHEEGGFAEKAEEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEMFSGYELNGRVLTVNKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAQDRPSRSSF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0363 299 PANTHER OS02G0815200 PROTEIN 4 93 - -
Gso5g0363 299 PANTHER OS02G0815200 PROTEIN 98 299 - -
Gso5g0363 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Gso5g0363 299 SUPERFAMILY RNA-binding domain, RBD 116 212 IPR035979 GO:0003676
Gso5g0363 299 SUPERFAMILY RNA-binding domain, RBD 206 297 IPR035979 GO:0003676
Gso5g0363 299 CDD RRM_HP0827_like 118 195 - -
Gso5g0363 299 CDD RRM_HP0827_like 215 291 - -
Gso5g0363 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Gso5g0363 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 188 IPR000504 GO:0003723
Gso5g0363 299 MobiDBLite consensus disorder prediction 81 109 - -
Gso5g0363 299 PANTHER RIBONUCLEOPROTEIN 98 299 - -
Gso5g0363 299 PANTHER RIBONUCLEOPROTEIN 4 93 - -
Gso5g0363 299 SMART rrm1_1 215 288 IPR000504 GO:0003723
Gso5g0363 299 SMART rrm1_1 118 191 IPR000504 GO:0003723
Gso5g0363 299 Gene3D - 200 298 IPR012677 -
Gso5g0363 299 Gene3D - 73 199 IPR012677 -
Gso5g0363 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0363 Gso-Chr5 3807516 3810163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0363 106 296 Eukaryotic Initiation Factors Gene Family AT3G16380 34.000 8.33e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0363 - - gmx:100811487 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0363 5 3807516 3810163 Gso17g1060 17 10045885 10048296 GST
Gso5g0363 5 3807516 3810163 Gso4g1601 4 45662882 45665948 PCT
Gso5g0363 5 3807516 3810163 Gso6g1479 6 14910458 14913166 PCT
Gso4g1601 4 45662882 45665948 Gso5g0363 5 3807516 3810163 PCT
Gso6g1479 6 14910458 14913166 Gso5g0363 5 3807516 3810163 PCT