Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0359 ATGGAGATGGAACGCGTCTTCGAATTTCCTCACACTTACATGGATCGTCGCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAAGTTCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAACATACCACTAGTTCTCTATTTGTTAAGCCAGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGGCATTACATGTTTACGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCCATACCAAAATGGGTGAAGGAACTTTTGGGCAGGTCTTAGAATGCTGGGATAGAGAAAGGAAGGAAATGGTTGCCGTAAAAATTGTCCGTGGTATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAACTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCATGTGATATATGGAGTGTGGGATGTATATTGGTTGAATTATGCACAGGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTTGCAATGATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGACCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGTGCAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCTTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTTACAGCCAAGGAAGCTCTTAGACATTCCTTCTTTATGAGAGAACACTTTAGAAGATGA 1293 0.423 MEMERVFEFPHTYMDRRPRKRARLGWDIPEVPKAQVGLFCGQDVGTISSFAPSRGPSEHTTSSLFVKPVARNGSPPWRDDDKDGHYMFTLGENLTSRYKIHTKMGEGTFGQVLECWDRERKEMVAVKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGKQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSSCSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGSLPQTMMKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLVMQHVDHSAGDLIHLLQGLLRYDPSERLTAKEALRHSFFMREHFRR* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0359 430 SUPERFAMILY Protein kinase-like (PK-like) 85 427 IPR011009 -
Gso5g0359 430 PANTHER KINASE AFC1 1 430 - -
Gso5g0359 430 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Gso5g0359 430 MobiDBLite consensus disorder prediction 51 68 - -
Gso5g0359 430 MobiDBLite consensus disorder prediction 51 78 - -
Gso5g0359 430 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 430 - -
Gso5g0359 430 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0359 430 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0359 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gso5g0359 430 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0359 430 CDD PKc_CLK 85 423 - -
Gso5g0359 430 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0359 Gso-Chr5 3774128 3778009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0359 103 423 Core Cell Cycle Gene Families AT1G76540 25.672 7.13e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gso5g0359 Pkinase 7.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0359 K08287 - gmx:100804022 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0359 5 3774128 3778009 Gso17g1058 17 10025585 10029535 GST