Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso5g0353 | ATGGCAATTTCTTGGGCAGCAGCAACAACCTCAAAGCTCGCATACCCTCCTCATGTCCACTTCTCTCCTTCACCCTCCTCCAATTATCTCTTCCTTAAAACCCACAAACCCTCCGCCACACACCTCTCCTCTTCCTTCATCCACCCCACCACAATCCTCCACCTCGCCGCTGCCAACACCACCACCCGCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGTAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAATAGTGCCCCTAAAAAATACGACGAGATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCTGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCAATGCCCCAAACCAAAGAACACATTCTTTTGGCCAAACAAGTCGGCGTTCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTTCAGTTAGTAGAATTGGAGGTCCGGGAGCTTCTTTCCAAGTACGAGTTCCCCGGAGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTGTCTTTGGAAGCTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTCATGGAAGCTGTGGATGACTACATTCCCATCCCTCAGCGCCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTTCACCATCACCGGTCGTGGAACCGTCGCCACCGGAAGGGTTGAGAGAGGTACTATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTGAAGGAGACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGATGAGGCTTTGGCTGGGGACAATGTGGGCTTGTTGCTTAGGGGTATTCAGAAAACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACTCCTCACACGAAGTTTTCTGCAATTGTGTATGTCTTGAAGAAGGAAGAGGGTGGGAGGCACTCTCCCTTCTTTTCCGGCTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGAAATTATGAATGACAAGGATGAAGAGTCCAAGATGGTTATGCCGGGCGACCGTGTTAAGCTGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAG | 1440 | 0.5403 | MAISWAAATTSKLAYPPHVHFSPSPSSNYLFLKTHKPSATHLSSSFIHPTTILHLAAANTTTRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSKYEFPGDDVPIISGSALLSLEALMANPAIKRGENQWVDKIYELMEAVDDYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIRVGETVDIVGVKETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEIMNDKDEESKMVMPGDRVKLVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE* | 480 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso5g0353 | 479 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 80 | 284 | IPR000795 | GO:0003924|GO:0005525 | |
Gso5g0353 | 479 | PANTHER | ELONGATION FACTOR TU | 39 | 479 | - | - | |
Gso5g0353 | 479 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 121 | 136 | IPR031157 | - | |
Gso5g0353 | 479 | Gene3D | Translation factors | 286 | 414 | - | - | |
Gso5g0353 | 479 | TIGRFAM | EF-Tu: translation elongation factor Tu | 72 | 479 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Gso5g0353 | 479 | CDD | EF_Tu | 81 | 283 | IPR041709 | - | |
Gso5g0353 | 479 | SUPERFAMILY | Translation proteins | 285 | 381 | IPR009000 | - | |
Gso5g0353 | 479 | PRINTS | GTP-binding elongation factor signature | 84 | 97 | IPR000795 | GO:0003924|GO:0005525 | |
Gso5g0353 | 479 | PRINTS | GTP-binding elongation factor signature | 128 | 136 | IPR000795 | GO:0003924|GO:0005525 | |
Gso5g0353 | 479 | PRINTS | GTP-binding elongation factor signature | 148 | 158 | IPR000795 | GO:0003924|GO:0005525 | |
Gso5g0353 | 479 | PRINTS | GTP-binding elongation factor signature | 164 | 175 | IPR000795 | GO:0003924|GO:0005525 | |
Gso5g0353 | 479 | PRINTS | GTP-binding elongation factor signature | 201 | 210 | IPR000795 | GO:0003924|GO:0005525 | |
Gso5g0353 | 479 | CDD | EFTU_II | 291 | 377 | IPR033720 | - | |
Gso5g0353 | 479 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 78 | 306 | IPR027417 | - | |
Gso5g0353 | 479 | TIGRFAM | small_GTP: small GTP-binding protein domain | 83 | 216 | IPR005225 | GO:0005525 | |
Gso5g0353 | 479 | Pfam | Elongation factor Tu GTP binding domain | 80 | 281 | IPR000795 | GO:0003924|GO:0005525 | |
Gso5g0353 | 479 | Pfam | Elongation factor Tu domain 2 | 305 | 373 | IPR004161 | GO:0005525 | |
Gso5g0353 | 479 | CDD | EFTU_III | 380 | 474 | - | - | |
Gso5g0353 | 479 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 378 | 478 | IPR009001 | - | |
Gso5g0353 | 479 | Pfam | Elongation factor Tu C-terminal domain | 378 | 477 | IPR004160 | - | |
Gso5g0353 | 479 | Gene3D | Translation factors | 418 | 478 | - | - | |
Gso5g0353 | 479 | Hamap | Elongation factor Tu [tuf]. | 71 | 479 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Gso5g0353 | 479 | PANTHER | ELONGATION FACTOR TU-RELATED | 39 | 479 | - | - | |
Gso5g0353 | 479 | Gene3D | - | 72 | 283 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso5g0353 | Gso-Chr5 | 3696911 | 3698763 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso5g0353 | 78 | 477 | Eukaryotic Initiation Factors Gene Family | AT5G60390 | 30.337 | 1.29e-47 | 169 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso5g0353 | K02358 | - | gmx:100791320 | 905.59 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso5g0353 | 5 | 3696911 | 3698763 | Gso17g1050 | 17 | 9955079 | 9958305 | GST | |
Gso5g0353 | 5 | 3696911 | 3698763 | Gso4g1588 | 4 | 45500020 | 45502035 | PCT | |
Gso5g0353 | 5 | 3696911 | 3698763 | Gso6g1494 | 6 | 15042901 | 15044796 | PCT | |
Gso4g1588 | 4 | 45500020 | 45502035 | Gso5g0353 | 5 | 3696911 | 3698763 | PCT | |
Gso6g1494 | 6 | 15042901 | 15044796 | Gso5g0353 | 5 | 3696911 | 3698763 | PCT |