Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0346 ATGAACCCCTACGACAGCAGATATTCTGACGCCTCTTCTTTTCGCGGCCGTCGTAGTGATTTCGTTGGACCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCGCGGTTTCCTACGGCGTCCCTGGACCCAACGGGTTCCGATCCGCACCCGTTGCTCCGGTCCCACCCTTTGTGCCTCCTTCCGGAGGCTTTAATGTAGGTCGAGGCGGTGGCAGAGCGGGCTATGGTCACGTGAGTGATAGAATGGGTCGTAGCGGTGGTGGAAGAGGTCGTGGTGGTGGCGGCGGCGGGGGCGGTAGAGCCGGAGCTCACGGTTTTAGGGGCTCCGGGAGAGGAGGAGGCAGACACGGTGGTGGTTCTTCTAGGGATGATTTGAACAACATTGCACTTCCAAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAACTTCTATGTTGAGTGCCCTGCAGTGAGGGCCATGTCTGAGCAAGAAGTTTTGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGGAACGATGTGCCGAAGCCTGTAAGGATGTTTCATGAGGCGAATTTTCCTGATTACTGCCTTGAGGTTATTGCCAATCTGGGTTTTGCGGAGCCCACCCCTATTCAGGCTCAGGGTTGGCCCATGGCTCTTAAGGGTAGAGACTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCGTATCTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACAAGAGAGTTGGCTGTTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCCCGGGCAAATAAAAGAAGTACGTGCATCTATGGCGGCGCACCAAAGGGCCCCCAAATTCGGGAGCTTAAAAGAGGCGTTGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGAAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGATTCGACCAGATAGGCAAACACTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGGTAATTATTGGCTCACCATACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTTTAACAGACATGGAGAAATACAATAGATTAATCAGGCTGCTGAAAGAAGTGATGGACGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACCAGACAAATGAGAGTGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACCTTTTTTACACATGCCAATGCCAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGGTTGTGAGTCCTGCTTTGTCTGCATTGGTTCGGTCGGCTGGTTCTGGTCAATTTGGATCAGGGGGAAGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGAGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCCTGGCAGTGTCTGTAG 1821 0.4904 MNPYDSRYSDASSFRGRRSDFVGPIPPPSFVGRGGAVSYGVPGPNGFRSAPVAPVPPFVPPSGGFNVGRGGGRAGYGHVSDRMGRSGGGRGRGGGGGGGGRAGAHGFRGSGRGGGRHGGGSSRDDLNNIALPKQDFKNLVPFEKNFYVECPAVRAMSEQEVLHYRASREITVQGNDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAVQIQEEALKFGSRANKRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLLWSATWPREVETLARQFLRNPYKVIIGSPYLKANQSINQVVEVLTDMEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRVDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQVVSPALSALVRSAGSGQFGSGGSFRSRGRGGYGNRGLTSGSNAIPLGSKRPWQCL* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0346 606 Gene3D - 393 564 IPR027417 -
Gso5g0346 606 Pfam DEAD/DEAH box helicase 206 377 IPR011545 GO:0003676|GO:0005524
Gso5g0346 606 CDD SF2_C_DEAD 401 531 - -
Gso5g0346 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 182 210 IPR014014 GO:0003724
Gso5g0346 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 561 IPR001650 -
Gso5g0346 606 PANTHER LD32873P 71 591 - -
Gso5g0346 606 CDD DEADc_DDX5_DDX17 194 388 - -
Gso5g0346 606 SMART ultradead3 201 404 IPR014001 -
Gso5g0346 606 MobiDBLite consensus disorder prediction 69 128 - -
Gso5g0346 606 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 71 591 - -
Gso5g0346 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 542 IPR027417 -
Gso5g0346 606 SMART helicmild6 441 522 IPR001650 -
Gso5g0346 606 MobiDBLite consensus disorder prediction 1 27 - -
Gso5g0346 606 MobiDBLite consensus disorder prediction 566 587 - -
Gso5g0346 606 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 334 342 IPR000629 -
Gso5g0346 606 Pfam Helicase conserved C-terminal domain 412 522 IPR001650 -
Gso5g0346 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 388 IPR014001 -
Gso5g0346 606 Gene3D - 155 392 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0346 Gso-Chr5 3637025 3642318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0346 169 542 Eukaryotic Initiation Factors Gene Family AT3G19760 34.492 1.51e-69 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0346 K12823 - gmx:100777610 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0346 5 3637025 3642318 Gso17g0719 17 6590401 6595664 GST