Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0343 ATGGGTCGCCATTCCTGTTGTGTGAAGCAAAAATTAAGGAAAGGCTTATGGTCCCCTGAAGAAGATGAGAAGCTATTTAATTACATAACAAGATTTGGAGTCGGATGCTGGAGCTCGGTTCCCAAACTAGCTGGATTACAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGCATGTTCTCACAGCAGGAGGAGGATCTTATAATCAGTCTTCATGAAGTTCTTGGAAACAGGTGGGCTCAAATAGCAGCACAGTTACCAGGGAGAACAGACAATGAGATTAAGAACTTCTGGAACTCATGTTTAAAGAAGAAGCTTCTGAAGCAAGGGATTGACCCAAGTACACACAAGCCCCTCACAGAAGCTCATGTGAAGGAAGAAAAGAAAATCATAGAGACATCACCAATGCAAACACCATTGTCTCAAGGCCCTTCAGTTCCATTAATCTTTCCTTCATCACAGGGATCATCACTTCTAATAAGTGATTCCAGTTACTATGATGGAGGGCTAACAGAAGCCTCAAGAGAAATTTTCATGACCAAGCCAGCATTGGACCCTTTGTCCTACTATGATTTTCCAATGGGTGTTGCACAGTCTGGTTTTAACTTACCTGTTAGTCAGTATCAGACAAGCCTTAAAGCATCTGATCAGAACCCCTTTGGACCCAATTCAAGCTATGTATTCTCTTCAATGCCAAGTCTAACCAATTCTGATCACGGGAACGTGTCGGTGACTGAGTTTTCAGACAACAATTCAGCTTCCAAAATAAGTTCATTGTTCATGAATGACCAGGTGAAAGAAAGTTCCAGCAACAGCTCAAACTTGAGCACCATTTACCATGGAGGAGGGTGTCATATCAGCAGCATGATGGAAAATGCAGGGTTCTCGTGGGAGGGTGACAACAAGTTTGACCCTTTGTTTCAGTTCCAAGTAAATGCCACAAAATCAGAGGATTTTAAGACAAGTTCATGGGAAGAAGGGCAGCTGCATACTCAAAATTCCATAGATTTCACGAGCTTTCCGTTAACGTCACTTTCAGAAGATCTAACAGGAGCAAATTTTGATGTATTCCAGCATATATGA 1113 0.4187 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPSTHKPLTEAHVKEEKKIIETSPMQTPLSQGPSVPLIFPSSQGSSLLISDSSYYDGGLTEASREIFMTKPALDPLSYYDFPMGVAQSGFNLPVSQYQTSLKASDQNPFGPNSSYVFSSMPSLTNSDHGNVSVTEFSDNNSASKISSLFMNDQVKESSSNSSNLSTIYHGGGCHISSMMENAGFSWEGDNKFDPLFQFQVNATKSEDFKTSSWEEGQLHTQNSIDFTSFPLTSLSEDLTGANFDVFQHI* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0343 370 PANTHER MYB DOMAIN PROTEIN 55 1 366 - -
Gso5g0343 370 Gene3D - 11 67 - -
Gso5g0343 370 CDD SANT 70 109 IPR001005 -
Gso5g0343 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso5g0343 370 CDD SANT 17 61 IPR001005 -
Gso5g0343 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso5g0343 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso5g0343 370 SMART sant 13 63 IPR001005 -
Gso5g0343 370 SMART sant 66 114 IPR001005 -
Gso5g0343 370 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso5g0343 370 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso5g0343 370 PANTHER MYB TRANSCRIPTION FACTOR 1 366 - -
Gso5g0343 370 Gene3D - 69 143 - -
Gso5g0343 370 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso5g0343 370 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0343 Gso-Chr5 3614121 3616011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0343 1 147 MYB Transcription Factor Family AT4G01680 78.231 2.97e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g0343 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0343 K09422 - gmx:100811140 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0343 5 3614121 3616011 Gso4g1576 4 45341361 45343334 PCT
Gso5g0343 5 3614121 3616011 Gso6g1507 6 15200977 15202958 PCT
Gso4g1576 4 45341361 45343334 Gso5g0343 5 3614121 3616011 PCT
Gso6g1507 6 15200977 15202958 Gso5g0343 5 3614121 3616011 PCT