Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0341 ATGGCATCATCCAGCTCTTACAACTCTCCATGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAGTTCGCAAACGTCCACAAAATCTTTGGAGCCAGCAACGTGACGAAGCTCCTCAACGAGCTTCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAGGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGTGTAGGAGCCATCTCATTCCTGCAGAGACAAGTCCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTATTCTTACACTGACATCACTCCAACCTCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCACCAAGTACCCCAAAGGCAGTTTAGTGCAAGATTTGGTAACGAAGCAAGTGGGTTTTATCGCCACCAATCTGCTGCTACTGCTTTTTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCCTCGGAGGATATCAGTGAGGGAGCAGGAGCAGGAGGAGGTAATTTGTGA 567 0.5009 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDITPTSLSVPPGLASFHQVPQRQFSARFGNEASGFYRHQSAATAFSFPYALPWTDTSSEDISEGAGAGGGNL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0341 188 Coils Coil 89 109 - -
Gso5g0341 188 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gso5g0341 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 183 - -
Gso5g0341 188 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Gso5g0341 188 PANTHER ELONGATED PETIOLULE 1 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0341 Gso-Chr5 3570233 3572720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0341 2 116 AS2 family AT5G63090 91.304 1.20e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso5g0341 LOB 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0341 - - gmx:100803667 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0341 5 3570233 3572720 Gso17g0726 17 6675054 6677438 GST
Gso5g0341 5 3570233 3572720 Gso4g1573 4 45268377 45270803 PCT
Gso4g1573 4 45268377 45270803 Gso5g0341 5 3570233 3572720 PCT