Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0335 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTCTTCTACTTCCATTCCATTTTTTGCTAGCTGCTGCAGTGAACCAACAAGGGGAAGCTCTTCTATCATGGAAGAGAACCCTGAATGGATCCTTGGAGGTATTGAGTAACTGGGACCCAGTTCAAGACACCCCATGTAGCTGGTATGGGGTGAGTTGCAACTTCAAGAACGAAGTAGTACAATTGGATCTGAGGTATGTGGATTTGCTTGGAAGACTTCCCACTAATTTCACCTCATTGCTTTCCTTAACCAGTTTGATCTTCACCGGAACCAACCTCACTGGTTCAATCCCGAAAGAAATAGGTGAACTTGTGGAACTCGGCTACTTGGACTTGAGTGACAATGCCTTGAGTGGTGAAATCCCAAGTGAGCTATGTTACTTGCCCAAACTCGAGGAACTCCATCTCAACTCCAACGACCTCGTGGGGTCCATTCCAGTTGCAATTGGGAACCTCACGAAGTTGCAGAAGCTTATCCTCTACGACAATCAACTCGGCGGCAAAATTCCCGGCACCATCGGGAACCTTAAGAGCCTTCAAGTGATAAGAGCAGGTGGAAACAAGAACCTGGAAGGCCTTTTACCACAAGAAATTGGCAATTGTTCCAGTTTGGTCATGTTGGGTCTTGCTGAAACTAGCCTTTCAGGTTCTCTACCTCCAACTCTTGGCCTTTTGAAGAACCTTGAAACCATTGCCATTTACACTTCCCTACTCTCAGGTGAAATACCACCTGAACTTGGGGACTGCACAGGGCTCCAAAACATATATCTTTACGAGAACTCCCTCACTGGATCCATACCAAGCAAGTTGGGAAACCTTAAGAACCTCGAAAACCTTCTCCTGTGGCAGAACAACCTAGTTGGCACCATCCCTCCAGAGATTGGAAACTGCGAGATGTTGTCAGTGATTGACGTGTCAATGAACTCACTAACCGGAAGCATACCCAAAACATTCGGGAACTTGACATCACTGCAAGAGCTTCAACTAAGTGTGAACCAGATTTCAGGGGAGATTCCTGGAGAATTGGGCAAGTGCCAGCAACTCACGCATGTGGAACTCGACAACAATCTCATCACGGGTACTATACCCTCCGAATTGGGAAACCTTGCGAATCTAACACTGTTGTTCTTATGGCACAACAAGCTGCAAGGTAGCATTCCCTCTTCGCTTTCCAATTGTCAAAACCTAGAGGCTATTGATCTGTCGCAGAATGGATTAATGGGTCCCATACCCAAGGGGATATTCCAGCTCAAGAACCTCAACAAGCTCTTGCTTCTCTCCAACAATCTCTCGGGGAAAATCCCTTCTGAGATTGGGAATTGTTCCTCCCTAATTCGATTCCGAGCCAACGACAACAACATCACCGGGAGCATTCCCTCGCAGATTGGGAATCTCAATAATTTGAATTTCCTAGACCTAGGGAACAATCGCATTTCCGGAGTTATCCCGGCGGAGATCTCCGGCTGCCGGAATCTCGCTTTTCTCGACGTACATTCCAACTTCCTCGCCGGAAACTTGCCGGAGAGTTTGAGCCGGCTTAATTCGCTTCAGTTTCTCGATGCGTCCGATAACATGATCGAAGGTACCCTAAATCCTACCCTCGGCGAACTCGCGGCACTCTCCAAGCTCGTTCTCGCGAAGAATCGAATCTCCGGCTCAATTCCGAGTCAACTCGGTTCATGCTCCAAGCTACAATTGCTGGATCTCAGCAGCAACAATATCTCCGGCGAAATCCCCAGCAGCATCGGCAACATTCCGGCGCTGGAAATCGCTCTGAATCTGAGCCTGAACCAGCTCTCCGGCGAGATCCCTCAGGAGTTTTCCAGTTTGACGAAGCTCGGCATATTGGACATATCTCACAACGTTCTCAGCGGAAACCTCCAATATCTGGCGGGCCTGCAAAATCTCGTGGTGCTGAACATCTCGTACAACAAATTCACGGGACGCATTCCGGACACGCCGTTCTTCGCGAAGCTGCCGCTGAGCGTGCTGGCGGGGAACCCGGAGCTGTGCTTCTCCGGCAACGAGTGCGGCGGCAGAGGGAAGTCGGGGCGGCGGGCGAGGATGGCGCACGTGGCGATGGTGGTTCTGCTTTGCACAGCGTTCGTGCTGCTGATGGCGGCGCTGTACGTGGTGGTGGCAGCGAAACGACGAGGGGACCGCGAAAGCGACGTGGAGGTGGATGGAAAGGACAGCAACGCGGACATGGCTCCACCTTGGGAAGTAACGCTGTACCAGAAACTCGATCTGTCTATCTCTGACGTAGCGAAATGTCTCTCTGCTGGCAACGTCATCGGCCACGGCCGATCCGGCGTCGTTTACAGGGTCGACTTGCCCGCCACAGGACTCGCCATCGCGGTCAAGAAGTTCCGTTTGTCGGAGAAATTCTCCGCGGCGGCGTTCTCGTCGGAGATTGCCACGCTGGCGCGAATCCGCCACCGGAACATCGTGCGCCTCCTGGGCTGGGGGGCCAACAGAAGAACCAAGTTACTGTTTTACGATTACTTACCGAACGGTAACTTGGATACTCTCTTACACGAGGGGTGCACAGGATTAATTGATTGGGAGACGCGGCTCAGGATAGCATTGGGCGTGGCTGAAGGTGTGGCTTACTTACACCACGATTGCGTGCCTGCTATCTTGCACCGGGATGTTAAGGCGCAGAACATTTTGTTGGGAGACAGATATGAACCCTGTTTGGCTGATTTTGGTTTCGCTCGCTTCGTCGAAGAGGATCACGCTTCCTTTTCCGTTAACCCACAGTTTGCAGGCTCCTACGGCTACATTGCTCCCGAGTATGCTTGCATGCTTAAGATCACAGAGAAGAGCGACGTGTACAGCTTTGGAGTGGTCCTACTGGAGATAATAACGGGGAAAAGGCCAGTGGATCCATCATTCCCGGATGGACAACAACATGTTATTCAGTGGGTGAGGGAGCACCTCAAGAGCAAGAAGGACCCAGTCGAGGTTCTTGATTCCAAGCTACAAGGCCATCCAGACACGCAAATACAAGAGATGCTACAAGCACTTGGTATTGCTCTCTTGTGCACAAGTAATCGTGCAGAGGATCGACCCACAATGAAAGATGTTGCTGCATTATTGAGAGAAATTCGTCACGACCCTCCAACAAGTGCTGAGCCCCACAAGCCCAAGCCCAAGCCCAAGCCCTATTCAACCGAGGCTTCTTCCTATTCCTCCTCCTCAGTCACCCCTGCTCAGTTGTTGCTCCTACAATCTAGCTCCCATTCCTCATCATCACTTGCTTATTCCTCTTCCTCAGCAGCTGGCTACCACCCTCCAAGGAACCAATCCTGA 3357 0.5097 MPVNPWTLFFLCISLLLLPFHFLLAAAVNQQGEALLSWKRTLNGSLEVLSNWDPVQDTPCSWYGVSCNFKNEVVQLDLRYVDLLGRLPTNFTSLLSLTSLIFTGTNLTGSIPKEIGELVELGYLDLSDNALSGEIPSELCYLPKLEELHLNSNDLVGSIPVAIGNLTKLQKLILYDNQLGGKIPGTIGNLKSLQVIRAGGNKNLEGLLPQEIGNCSSLVMLGLAETSLSGSLPPTLGLLKNLETIAIYTSLLSGEIPPELGDCTGLQNIYLYENSLTGSIPSKLGNLKNLENLLLWQNNLVGTIPPEIGNCEMLSVIDVSMNSLTGSIPKTFGNLTSLQELQLSVNQISGEIPGELGKCQQLTHVELDNNLITGTIPSELGNLANLTLLFLWHNKLQGSIPSSLSNCQNLEAIDLSQNGLMGPIPKGIFQLKNLNKLLLLSNNLSGKIPSEIGNCSSLIRFRANDNNITGSIPSQIGNLNNLNFLDLGNNRISGVIPAEISGCRNLAFLDVHSNFLAGNLPESLSRLNSLQFLDASDNMIEGTLNPTLGELAALSKLVLAKNRISGSIPSQLGSCSKLQLLDLSSNNISGEIPSSIGNIPALEIALNLSLNQLSGEIPQEFSSLTKLGILDISHNVLSGNLQYLAGLQNLVVLNISYNKFTGRIPDTPFFAKLPLSVLAGNPELCFSGNECGGRGKSGRRARMAHVAMVVLLCTAFVLLMAALYVVVAAKRRGDRESDVEVDGKDSNADMAPPWEVTLYQKLDLSISDVAKCLSAGNVIGHGRSGVVYRVDLPATGLAIAVKKFRLSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIDWETRLRIALGVAEGVAYLHHDCVPAILHRDVKAQNILLGDRYEPCLADFGFARFVEEDHASFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGQQHVIQWVREHLKSKKDPVEVLDSKLQGHPDTQIQEMLQALGIALLCTSNRAEDRPTMKDVAALLREIRHDPPTSAEPHKPKPKPKPYSTEASSYSSSSVTPAQLLLLQSSSHSSSSLAYSSSSAAGYHPPRNQS* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0335 1118 MobiDBLite consensus disorder prediction 1099 1118 - -
Gso5g0335 1118 SUPERFAMILY Protein kinase-like (PK-like) 762 1050 IPR011009 -
Gso5g0335 1118 SMART LRR_sd22_2 527 553 - -
Gso5g0335 1118 SMART LRR_sd22_2 383 406 - -
Gso5g0335 1118 SMART LRR_sd22_2 575 601 - -
Gso5g0335 1118 SMART LRR_sd22_2 118 150 - -
Gso5g0335 1118 SMART LRR_sd22_2 166 192 - -
Gso5g0335 1118 SMART LRR_sd22_2 479 497 - -
Gso5g0335 1118 SMART LRR_sd22_2 263 289 - -
Gso5g0335 1118 SMART LRR_sd22_2 407 436 - -
Gso5g0335 1118 SMART LRR_sd22_2 624 649 - -
Gso5g0335 1118 PANTHER OS01G0170300 PROTEIN 4 1069 - -
Gso5g0335 1118 SMART serkin_6 773 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0335 1118 Gene3D Phosphorylase Kinase; domain 1 750 849 - -
Gso5g0335 1118 Pfam Leucine rich repeat 314 372 IPR001611 GO:0005515
Gso5g0335 1118 Gene3D Ribonuclease Inhibitor 27 187 IPR032675 -
Gso5g0335 1118 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Gso5g0335 1118 Pfam Leucine Rich Repeat 577 598 IPR001611 GO:0005515
Gso5g0335 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 894 906 IPR008271 GO:0004672|GO:0006468
Gso5g0335 1118 ProSiteProfiles Protein kinase domain profile. 773 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0335 1118 SUPERFAMILY RNI-like 76 397 - -
Gso5g0335 1118 SUPERFAMILY L domain-like 376 686 - -
Gso5g0335 1118 MobiDBLite consensus disorder prediction 1052 1069 - -
Gso5g0335 1118 MobiDBLite consensus disorder prediction 1052 1084 - -
Gso5g0335 1118 ProSitePatterns Protein kinases ATP-binding region signature. 779 803 IPR017441 GO:0005524
Gso5g0335 1118 Pfam Protein kinase domain 776 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0335 1118 Gene3D Ribonuclease Inhibitor 437 690 IPR032675 -
Gso5g0335 1118 Gene3D Ribonuclease Inhibitor 198 436 IPR032675 -
Gso5g0335 1118 Gene3D Transferase(Phosphotransferase) domain 1 850 1065 - -
Gso5g0335 1118 SMART LRR_typ_2 431 455 IPR003591 -
Gso5g0335 1118 SMART LRR_typ_2 479 503 IPR003591 -
Gso5g0335 1118 SMART LRR_typ_2 383 407 IPR003591 -
Gso5g0335 1118 SMART LRR_typ_2 287 311 IPR003591 -
Gso5g0335 1118 SMART LRR_typ_2 166 190 IPR003591 -
Gso5g0335 1118 SMART LRR_typ_2 647 671 IPR003591 -
Gso5g0335 1118 SMART LRR_typ_2 118 142 IPR003591 -
Gso5g0335 1118 SMART LRR_typ_2 551 575 IPR003591 -
Gso5g0335 1118 SMART LRR_typ_2 335 359 IPR003591 -
Gso5g0335 1118 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0335 Gso-Chr5 3487389 3492147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0335 27 1082 Receptor kinase-like Gene Family AT5G56040 55.266 0.0 1117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso5g0335 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0335 - - gmx:100305445 1962.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0335 5 3487389 3492147 Gso17g0732 17 6746338 6751057 GST