Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0323 ATGCGTTCTCAATCTCTCTCTCCTATTAAGGAACACAAACGGAGATGGCTTGAAACGCAGATGTTGCCCTCAGTTTCTGTTACTCCTCTCATGGACATTGAAACAAACCTCACAGAAAACTGTGCCTCACAGTCACAGCCAATGGATTTGCATGAAAACTACTTGAAACCAAGCATGGAAGATCAGCTTCCTTTTGGAACTCCTTCCACGCAGGGTTTCTTGCAAGATTTTCATCATATTGATCATCAGTTTCATGTGAATGGCTCCTCATCATCCAATCCCATTTTTGGGGTGCAAACTCCAAATTTTGATCCCTTTGATCAAAATGTAACATGTGAGTCTGCACCTCCTGATTTTGAAGCTTATGAGTGCAAGCCCTTAGCTGAGAGTAATGGTATTGGACATGCTCATCTTATGAACAATTTCCAATATGCAGGTTACAGTTTGAACCTCCCTCGGACGAATCAACTGGATTTGATGGTTGCAAACCAAAGTTATATGACCTTTAATGCTCTTGAAACCAAGCCTTTGAACTTTGTTGTACCAGATGAAGTCTCATGCATTTCCCCACCAAATTATTATAAGAGAGTTGGCTTGAATAAAAACCTCAGGGAATCTCCAAGCACTAGAAGAACATTCAAGGCCCGGAAGAAGTCCAACATAGTGAAGGGGCAATGGACATCAGATGAAGACAGATTGTTGATTCAACTGGTAGAACAATTTGGAGTGAGGAAGTGGTCACATATAGCTCAGGCGTTGCCTGGAAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTGAGGCCAGACATTAAGAAGGACACATGGACTGAAGAAGAGGATAAGATACTGATCCAAGCTCATGCAGAGATAGGAAATAAGTGGGCTGAGATTGCAAAAAAATTGCCTGGAAGAACTGAGAACTCAATCAAAAACCATTGGAACGCAACAAAGCGAAGGCAATATTCCAAAAGAAAGTGTCGTTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATACATCAAGAGCTTGAACTTGGACAAAAATCCACCTATAGACTATCGAAAAAAATCTGCCAAAAATGCTAATGCCAATACAAACAGCAATGGCAAAGCAGCAGCTCAGCCCCAGTGTTCAGATCAATTTTGTCTCAATAGCCAGATGGTGCCAAGGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAATTTGTTTGAAGAGGGGTGCAGCATTGATTCCCTGCTAGATGATATGCAAAGTGCATCTACTATGGATGAGAAAGGCTTTGATGAAAAAATAATGCAATGTGCTCCTACTATGGAGGGAAAACAATCTCATCAGGGTGGCATGCAGTGTGTTCATGTTGTTGATGTTGATGTGCATCATGAGACTGAGATGATGGCACACACGAATGGGATTGAAGTTAAGAAGGAACTTGATTTCGTGGAAATGATGTCCCACATGAATGGAAACCATTATAGTATACACTCACCATGTTGA 1512 0.4134 MRSQSLSPIKEHKRRWLETQMLPSVSVTPLMDIETNLTENCASQSQPMDLHENYLKPSMEDQLPFGTPSTQGFLQDFHHIDHQFHVNGSSSSNPIFGVQTPNFDPFDQNVTCESAPPDFEAYECKPLAESNGIGHAHLMNNFQYAGYSLNLPRTNQLDLMVANQSYMTFNALETKPLNFVVPDEVSCISPPNYYKRVGLNKNLRESPSTRRTFKARKKSNIVKGQWTSDEDRLLIQLVEQFGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDTWTEEEDKILIQAHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDKNPPIDYRKKSAKNANANTNSNGKAAAQPQCSDQFCLNSQMVPRYDFNEVPDFCLDDNLFEEGCSIDSLLDDMQSASTMDEKGFDEKIMQCAPTMEGKQSHQGGMQCVHVVDVDVHHETEMMAHTNGIEVKKELDFVEMMSHMNGNHYSIHSPC* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0323 503 CDD SANT 226 269 IPR001005 -
Gso5g0323 503 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 274 324 IPR017930 -
Gso5g0323 503 Pfam Myb-like DNA-binding domain 226 283 - -
Gso5g0323 503 SMART sant 222 271 IPR001005 -
Gso5g0323 503 SMART sant 274 322 IPR001005 -
Gso5g0323 503 Gene3D - 222 274 - -
Gso5g0323 503 ProSiteProfiles Myb-like domain profile. 270 320 IPR001005 -
Gso5g0323 503 SUPERFAMILY Homeodomain-like 220 316 IPR009057 -
Gso5g0323 503 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 218 273 IPR017930 -
Gso5g0323 503 ProSiteProfiles Myb-like domain profile. 218 269 IPR001005 -
Gso5g0323 503 CDD SANT 277 320 IPR001005 -
Gso5g0323 503 PANTHER BNAC07G50190D PROTEIN 173 349 - -
Gso5g0323 503 Gene3D - 276 328 - -
Gso5g0323 503 PANTHER MYB PROTEIN-RELATED 173 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0323 Gso-Chr5 3366354 3368448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0323 175 422 MYB Transcription Factor Family AT4G18770 57.252 7.55e-95 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g0323 Myb_DNA-bind_6 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0323 K09422 - gmx:100816653 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0323 5 3366354 3368448 Gso17g0747 17 6891359 6893369 GST
Gso6g1526 6 15597647 15599583 Gso5g0323 5 3366354 3368448 PCT