Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0311 ATGAAGAACTTATACTGGTTCAAAGAGATTTCTAACAACGTGAGATCAGGGAGAAGGCTTTCACTAGGGGAATACAAGAGAGCAGTGTCATGGTCAAAGTATTTGGTCTCTTCTGGGGCGGCCATAAAGGGAGAAGGAGAAGAAGAATGGAGTGCTGATCTGTCTCAGTTGTTCATAGGGTCAAAATTTGCCTCTGGCAGGCATAGCAGGATCTACAGAGGCATCTACAAGCACATGGATGTTGCAATTAAGCTGGTGAGTCAACCTGAGGAGGATGAGGACTTGGCTGTTTTGCTTGAGAAGCAATTCACTTCTGAGGTTGCTTTGCTCTTTCGATTGCGCCATCCAAATATCATTACTTTTGTTGCAGCTTGCAAGAAACCTCCTGTGTTCTGCATAATTACTGAATATTTGGCTGGGGGTTCCTTGAGAAAATACTTGGTTCAGCAAGGGCCACATTCAGTTACTCACAAAGTTGTTCTGAAATTAGCTTTAGACATAGCACGGGGAATGCAATATCTTCATTCTCAGGGTATACTTCACAGGGATCTCAAATCAGAAAACCTGCTGTTGGGGGAAGATTTGTGCGTAAAAGTAGCAGATTTTGGGATCTCTTGCTTGGAATCTCAGACAGGCAGTGCAAAAGGATTCACTGGAACATACCGTTGGATGGCACCTGAAATGATCAAAGAAAAGCGTCACACCAAGAAAGTAGATGTCTATAGTTTCGCCATAGTTCTATGGGAACTATTAACAGGATTGACGCCATTTGACAACATGACACCAGAGCAAGCAGCATATGCTGTGACTCACAAGAATGAAAGGCCTCCGTTGCCATGTGACTGTCCAAAGGCATTTAGCCATCTCATCAACAGATGCTGGTCAAGCAACCCTGATAAAAGGCCACATTTTAATGAGATAGTCACAATTTTGGAGAGCTACATTGAAGCACTTGAGCAGGATCCAGAATTTTTCTCTACTTACAAACCACGTCCTAATAATATAATTCTCAGATGCTTATCAAAATGTAGTAATATATTTGCTTCTTGCAAAGCTTAG 1059 0.423 MKNLYWFKEISNNVRSGRRLSLGEYKRAVSWSKYLVSSGAAIKGEGEEEWSADLSQLFIGSKFASGRHSRIYRGIYKHMDVAIKLVSQPEEDEDLAVLLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLVQQGPHSVTHKVVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDLCVKVADFGISCLESQTGSAKGFTGTYRWMAPEMIKEKRHTKKVDVYSFAIVLWELLTGLTPFDNMTPEQAAYAVTHKNERPPLPCDCPKAFSHLINRCWSSNPDKRPHFNEIVTILESYIEALEQDPEFFSTYKPRPNNIILRCLSKCSNIFASCKA* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0311 352 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Gso5g0311 352 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Gso5g0311 352 CDD STKc_MAP3K-like 64 311 - -
Gso5g0311 352 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Gso5g0311 352 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Gso5g0311 352 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Gso5g0311 352 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Gso5g0311 352 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Gso5g0311 352 Gene3D Transferase(Phosphotransferase) domain 1 140 341 - -
Gso5g0311 352 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0311 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Gso5g0311 352 Pfam Protein tyrosine and serine/threonine kinase 59 311 IPR001245 GO:0004672|GO:0006468
Gso5g0311 352 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0311 352 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Gso5g0311 352 Gene3D Phosphorylase Kinase; domain 1 47 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0311 Gso-Chr5 3246741 3250183 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0311 30 320 MAP Kinase Kinase Kinase AT1G62400 64.407 6.24e-137 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso5g0311 PK_Tyr_Ser-Thr 2.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0311 - - gmx:100778530 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1536 6 15784568 15789677 Gso5g0311 5 3246741 3250183 PCT