Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso5g0309 | ATGGCCATCAGAGGCGTCGATTTCAAGTGGTACGATGGGTTTTTCTTGTCCATGCTCGCCACCAGTGTAGTTATAGTGGCAATTAATTGGAAGCGGTATCATTCTTGTACGTATCCGTTGCATATATGGATTGTGGTCGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCAGGAATGGGATTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCTTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTTTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGTTTGCCTGAAGTGGGTACAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTCCTTTGCATTGCTTGCATGTCGCTGGGGAAGTGGTTGACTCGAAGACAAGCACATTTATTGCGTGCCCAACAGGGTATCCCTGTATCTGAATACGGGGTTCTGGTTGACATGATCCGAGTTCCCGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGAAATGAGGTCCGTGGCCTGCCTTGTGCTCACAATTTTCATGTCGAATGCATTGATGAGTGGCTTAGGTTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTTTTCCCAAACCTTGATCTTAGTGCACTGTCCAATCTCCGTGCTGAGCCTGAAGAATCTTCTGCCAGTGTTGTGACAACAACCAGATATGTGAGAGGCCAACCATCTAGTCAAAGTTACCGGCTAAGATTGCAGGGTCTTCTGCGTCCAGTCGGTGCTGAAATTGCAGGACCAGTTGGTGACATAGATAATGTGTTGGAAAATGCCGAGAATGGCAGCGTATCAATTGTGACTCAAAATGCATCATCTGGAGACCATGCCTCTTCTGTCGAATGTATGCCTGTTACTGTCAGTCATTCCTCTGCACAAAGTTAG | 1149 | 0.4639 | MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVFSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEVGTKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPEESSASVVTTTRYVRGQPSSQSYRLRLQGLLRPVGAEIAGPVGDIDNVLENAENGSVSIVTQNASSGDHASSVECMPVTVSHSSAQS* | 383 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso5g0309 | 382 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 281 | IPR013083 | - | |
| Gso5g0309 | 382 | Pfam | Ring finger domain | 234 | 276 | IPR001841 | - | |
| Gso5g0309 | 382 | ProSiteProfiles | Zinc finger RING-type profile. | 235 | 276 | IPR001841 | - | |
| Gso5g0309 | 382 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 361 | IPR044793 | GO:0004842|GO:0010182 | |
| Gso5g0309 | 382 | CDD | RING-H2_RNF111_like | 234 | 278 | - | - | |
| Gso5g0309 | 382 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 361 | - | - | |
| Gso5g0309 | 382 | SMART | ring_2 | 235 | 275 | IPR001841 | - | |
| Gso5g0309 | 382 | SUPERFAMILY | RING/U-box | 217 | 284 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso5g0309 | Gso-Chr5 | 3220253 | 3226327 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso5g0309 | 58 | 360 | C3H Transcription Factor Family | AT3G47990 | 73.529 | 3.76e-160 | 450 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso5g0309 | K16284 | - | gmx:100812016 | 791.571 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso5g0309 | 5 | 3220253 | 3226327 | Gso17g0760 | 17 | 7042495 | 7048998 | GST | |
| Gso5g0309 | 5 | 3220253 | 3226327 | Gso4g1532 | 4 | 44348601 | 44353339 | PCT | |
| Gso5g0309 | 5 | 3220253 | 3226327 | Gso6g1539 | 6 | 15832528 | 15838085 | PCT | |
| Gso4g1532 | 4 | 44348601 | 44353339 | Gso5g0309 | 5 | 3220253 | 3226327 | PCT | |
| Gso6g1539 | 6 | 15832528 | 15838085 | Gso5g0309 | 5 | 3220253 | 3226327 | PCT |