Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0307 ATGAAAAAACCAAACACTAGTACTAGTGGTTCACCAAAACTTGATCGCAAAACTATCGAAAGGAACCGCAGGATTCACATGAAATCTCTCTGCTTCAAGCTTGTTTCCACTATTCCTTCCAATGACCTCAAACCCACCAAGGACATGCTTTCCCAGCAGGATCAGCTTGATCTAGCAACCACGTACATAAAGCGTCTGAAGGAAAGAATAGAGAAACTGAAGGGGGAGAAGGAGAAAATCATGAACATGATGATGAGCTCAAACCAAAACAACAATAGCATTTTCAATATTGGCTCACAGTTGCCTCTACTTGAGATAAAGGACTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGTTAAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTCGAGGAAGAGGGTGCTGAAGTTGTCACTGCCAACTTCTCTACAGTTGCTGATAAGATTTTTTACACGGTTCATGCTCAGGTTAAAATATCAAGAGTTGGTGTTGAGCCAACGAGGGTATATCAAAGGCTTCAGGAGTTGATTGCACCACTAGAAATCTGGGAGTACATACCATGA 576 0.4149 MKKPNTSTSGSPKLDRKTIERNRRIHMKSLCFKLVSTIPSNDLKPTKDMLSQQDQLDLATTYIKRLKERIEKLKGEKEKIMNMMMSSNQNNNSIFNIGSQLPLLEIKDLGSGIEVMLISGLNKNFMLYEVISVLEEEGAEVVTANFSTVADKIFYTVHAQVKISRVGVEPTRVYQRLQELIAPLEIWEYIP* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0307 191 PANTHER TRANSCRIPTION FACTOR BHLH162 6 181 - -
Gso5g0307 191 MobiDBLite consensus disorder prediction 1 20 - -
Gso5g0307 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 181 IPR015660 GO:0003700|GO:0006357
Gso5g0307 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Gso5g0307 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 78 IPR036638 GO:0046983
Gso5g0307 191 Coils Coil 56 90 - -
Gso5g0307 191 Gene3D - 3 95 IPR036638 GO:0046983
Gso5g0307 191 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0307 Gso-Chr5 3195854 3197085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0307 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.684 2.67e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g0307 HLH 5.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0307 - - gmx:100811485 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0307 5 3195854 3197085 Gso17g0762 17 7066640 7067915 GST
Gso5g0307 5 3195854 3197085 Gso6g1541 6 15861636 15863672 PCT
Gso6g1541 6 15861636 15863672 Gso5g0307 5 3195854 3197085 PCT