Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0306 ATGAAGGAAAGCAGTGATGGGTTTGTGAGAGCGGATCAGATTGATCTGAAGAGCATAGATGAACAGTTGGAGAGGCACCTCAGCAAGGTGTTGACCATAGAAAAGAAAAAGCGCTCTGAAGGGGAAGAAGATGCTGATCATGTTCATCTTCATGTTCACACCACCAGTGCCACTGCTTCTCCCAAATTCTCACATGCTTCTTCTGCTGCTAGGGTTAACTTCAAGAAGAAAAAGCAGGATTGGGAGATTGATCCTTCTAAACTCATCATCAAAACTGTTATAGCTCGTGGTACTTTTGGCACTGTCCATCGTGGTGTCTATGATACCCAAGATGTTGCTGTGAAATTGTTGGACTGGGGGGAAGAAGGTCAAAGGACAGAAGCAGAAATTGCCTCCCTGAGGGCAGCGTTTACCCAGGAAGTTGCTGTTTGGCATAAACTTGATCACCCCAATGTCACAAAGTTTATAGGGGCAACAATGGGGTCTTCAGAATTGCAGATACAAACTGATAATGGTCTAATTGGCATGCCAAGCAATGTCTGTTGTGTTGTTGTTGAGTATCTTGCTGGAGGCAATTTGAAACAATATCTAATTAAGAACAGGAGGAGGAAGTTAGCTTTTAAAGTTGTCATCCAGCTGGCACTTGATCTTGCAAGAGGGCTGAGTTATCTTCACTCCCAGAAGATTGTCCATAGAGATGTAAAGACAGAGAACATGCTATTGGATAAGACACGCACAGTTAAAATTGCTGATTTTGGGGTTGCACGTGTTGAGGCATCAAATCCTAATGATATGACTGGGGAGACTGGTACTCTTGGTTATATGGCTCCAGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAAATCACTTCAGCTGTTGTTCGCCAGAACTTAAGACCAGAAGTACCAAGATGTTGCCCGAGTTCTCTGGCAAATGTAATGAAGAAGTGCTGGGATGCCAGTCCCGATAAGCGGCCGGAGATGGATGAGGTAGTTTCCATGCTGGAGGCCATTGACACATCCAAAGGTGGAGGTATGATCCCTCTTGATCAGCAGCAGGGTTGTTTCTGCTTCCGCAAGCATAGAGGGCCTTGA 1176 0.4439 MKESSDGFVRADQIDLKSIDEQLERHLSKVLTIEKKKRSEGEEDADHVHLHVHTTSATASPKFSHASSAARVNFKKKKQDWEIDPSKLIIKTVIARGTFGTVHRGVYDTQDVAVKLLDWGEEGQRTEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATMGSSELQIQTDNGLIGMPSNVCCVVVEYLAGGNLKQYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEVPRCCPSSLANVMKKCWDASPDKRPEMDEVVSMLEAIDTSKGGGMIPLDQQQGCFCFRKHRGP* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0306 391 PRINTS Tyrosine kinase catalytic domain signature 185 198 IPR001245 GO:0004672|GO:0006468
Gso5g0306 391 PRINTS Tyrosine kinase catalytic domain signature 223 241 IPR001245 GO:0004672|GO:0006468
Gso5g0306 391 PRINTS Tyrosine kinase catalytic domain signature 289 311 IPR001245 GO:0004672|GO:0006468
Gso5g0306 391 PRINTS Tyrosine kinase catalytic domain signature 333 355 IPR001245 GO:0004672|GO:0006468
Gso5g0306 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Gso5g0306 391 CDD STKc_MAP3K-like 94 362 - -
Gso5g0306 391 SMART serkin_6 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0306 391 Gene3D Transferase(Phosphotransferase) domain 1 189 380 - -
Gso5g0306 391 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 385 - -
Gso5g0306 391 SUPERFAMILY Protein kinase-like (PK-like) 70 362 IPR011009 -
Gso5g0306 391 ProSiteProfiles Protein kinase domain profile. 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0306 391 Gene3D Phosphorylase Kinase; domain 1 76 171 - -
Gso5g0306 391 Pfam Protein tyrosine and serine/threonine kinase 90 362 IPR001245 GO:0004672|GO:0006468
Gso5g0306 391 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0306 Gso-Chr5 3168405 3175290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0306 1 323 MAP Kinase Kinase Kinase AT5G50000 79.567 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso5g0306 PK_Tyr_Ser-Thr 7.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0306 - - gmx:100807921 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0306 5 3168405 3175290 Gso17g0763 17 7085366 7090447 GST