Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0301 ATGGTGGTAAGATCATGCTCGAATTTGTCTGACTTGGTGTCCAAGGACAGTTTGAATTCCCCTCAAACTCCTGGAGCTCTTCCCCGACACCTGTCTGTTCCAGGAATTATGTCTGATGTGGATAGCAAACTAACGGGCAATGATGATTCAAATGCTTTCTCATCAGAACTACATCAGAAGAAGATCATTATAGCAGCAAATTTCCTTCCTCTTAATGCTCAAAAGGATGAAATATCTGGCAAATGGTGCTTCACTTATGATGAAGATTCAATCTTGGTGCCATTGAAGGATGGTCCCTCTTCTGACACTGAGGTCCTTTATGTGGGATCTCTGAAGGTTGATGTTGATGCTAGTGAACAAGAGAAAGTTTCTCTTCAGCTACTGGAGGAATTCAATTGCTTGCCTACCTTTATTCCTTCAGACATCCAGAAACTGTTTTATAATGGCTTCTGCAAGCAACATTTGTGGCCTCTGTTCCATTACATGTTGCCGTTGTATCCAGACTACTGCAATCGTTTTGACAAGTCACTGTGGCAGGCTTATGTTTCTGCTAACAAAATATTTGCTGATAAAGTCATGGAGGTTATGAATCCAGAGCATGATTATGTATGGGTTCATGATTATCATCTTATGGTTATTCCAACATTTCTACGGAAGCGATACAGTTGGATCAAGATAGGATTTTTCCTCCACTCTCCATTTCCTTCATCAGAAATTTATCGGGCTTTACCTGTCAGGGATGAAATTTTGAAAGCACTGCTTAATGCAGATTTAATTGGTTTTCATACATTTGATTATGCTCGCCACTTTCTTTCCTGCTGCAGTCGAATTCTTGGCTTAGAATATGAATCCAAAAGGGGTTACATCAGGCTCAAATACTTTGGCCGTACAATATTCATTAAAATCTTGCCTGTAGGGATTCATATGGATCGACTTCAATCTGCCTTTAATCACTCTTCTTTTTCAGTCAATGTCAGAGAAATGTCAGAGAAGTTCAAGGAGAAAAAACTTATTCTTGGAGTAGATGATATGGACATTTTTAAAGGTATCAGCCTAAAGCTATTGGCCATAGAACAACTCCTTCAGCAATATCCTGAATTGTTGGGAGAATTAATACTTGTCCAGATTGTAAATCCACCAAGAAGTACTGGTAAGGATGTAGAGGAAGCAAGGAACGAGATGCACATTATTGCCAACAGGATAAATGAAAGGTTTGGTTTGCTAGATTATGAACCTGTCATCATCATCAATCGTCATGTTCCGTTATATGAGAAGGCATCCTACTATGCTTTAGCAGAATGTTGCATTGTGGATGCGGTGCGGGATGGTATGAATTTGGTTCCTTACGAGTACATTGTCTGCAGGCAGGGGAGTCCTACAATGGATGAAGCTTTAGACATTGGTTCTGAATCACCTCGTACAAGTGCACTTGTTGTCTCTGAGTTTATAGGTTGCTCACCTTCTCTTAGTGGGGCAATCAGGGTAAACCCATGGGACATTAATGCTGTAGCCGATGCACTGAATTTGGCCATCACAATGCCCAGTGGAGAGAAACAGTTGCGGCATGAGAAGCACTATCGATATGTTAGCTCTCATGACGTAGCTTACTGGGCCAAAAGTTTTGTGCAAGATCTTGAGTATTCATGCAAGGATCACTATAGTAAAAATCGCTGGGGGATTGGCTTTGGCCTTAATTTCAGAGTTTTGTCCCTTTCTCCTACTTTCAGGAAGCTTAACAAAGACCATGCTGTTTCTGCATATGAAAGGACAAATTGCAGGGCATTCTTTTTGGATTATGATGGAACAGTTGTGCCTTCCGTTGTTAAAACTCCAAGTTCTGAAATCATAGATGTTCTAAATATCCTCTGCAGTGACCCTAAGAACACTGTGTTTATAGTAAGTGGGAGGGGGGAAACCACGCTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCTGCTGAGCATGGTTATTATCTAAAATGGAGTCAACAGTCAGCTTGGGAAATGAACCATACAAGTACCAGTTTTTCTTGGAAAGAGATTGTTGAACCTGTGATGAGATTGTATACTGAGGCAACAGATGGCTCCTATATAGAGACCAAAGAGAGTGCCTTGGTATGGCACTACTATGATGCTGATCCTGATTTTGGATCTTGGCAAGCCAAGCAGCTGTTGGATCACCTTGAAGGCTTATTTGCAAACGAACCGGTAACTGTAAAGAAAGGAAAGCATATTATTGAAGTCAAGTCACTGGGGATTACTAAAGGGTTAGTCGTGGAGGGCATTCTGTCCAAGATGACCAAGAATGGGAAAATACCTGATTTTGTACTCTGCATAGGGGATGATAGATCTGACGAGGACATGTTTGAGAGCTTGCTGAATAAAGTTTACAGTGGAACCTCTTCTCCTGCACCAGAAATCTTTGCATGCACTGTTGGTCAAAAACCAAGTAAAGCTAGGTACTATTTAGAGGATACTGAGGATGTGATGAGGTTACTTCAAGCTCTTGGTACCGTTTCAGTGCCTAAATCAACATCTCCTGAGGAAGACTCTTTTGGAAAAACAGAAGCCTGTTTCGACGTTTGA 2592 0.4113 MVVRSCSNLSDLVSKDSLNSPQTPGALPRHLSVPGIMSDVDSKLTGNDDSNAFSSELHQKKIIIAANFLPLNAQKDEISGKWCFTYDEDSILVPLKDGPSSDTEVLYVGSLKVDVDASEQEKVSLQLLEEFNCLPTFIPSDIQKLFYNGFCKQHLWPLFHYMLPLYPDYCNRFDKSLWQAYVSANKIFADKVMEVMNPEHDYVWVHDYHLMVIPTFLRKRYSWIKIGFFLHSPFPSSEIYRALPVRDEILKALLNADLIGFHTFDYARHFLSCCSRILGLEYESKRGYIRLKYFGRTIFIKILPVGIHMDRLQSAFNHSSFSVNVREMSEKFKEKKLILGVDDMDIFKGISLKLLAIEQLLQQYPELLGELILVQIVNPPRSTGKDVEEARNEMHIIANRINERFGLLDYEPVIIINRHVPLYEKASYYALAECCIVDAVRDGMNLVPYEYIVCRQGSPTMDEALDIGSESPRTSALVVSEFIGCSPSLSGAIRVNPWDINAVADALNLAITMPSGEKQLRHEKHYRYVSSHDVAYWAKSFVQDLEYSCKDHYSKNRWGIGFGLNFRVLSLSPTFRKLNKDHAVSAYERTNCRAFFLDYDGTVVPSVVKTPSSEIIDVLNILCSDPKNTVFIVSGRGETTLSEWFDQCENLGIAAEHGYYLKWSQQSAWEMNHTSTSFSWKEIVEPVMRLYTEATDGSYIETKESALVWHYYDADPDFGSWQAKQLLDHLEGLFANEPVTVKKGKHIIEVKSLGITKGLVVEGILSKMTKNGKIPDFVLCIGDDRSDEDMFESLLNKVYSGTSSPAPEIFACTVGQKPSKARYYLEDTEDVMRLLQALGTVSVPKSTSPEEDSFGKTEACFDV* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0301 863 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 595 793 IPR006379 -
Gso5g0301 863 TIGRFAM T6PP: trehalose-phosphatase 593 838 IPR003337 GO:0003824|GO:0005992
Gso5g0301 863 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 549 - -
Gso5g0301 863 Gene3D - 721 852 IPR023214 -
Gso5g0301 863 Gene3D - 592 706 IPR023214 -
Gso5g0301 863 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 846 IPR001830 GO:0003824|GO:0005992
Gso5g0301 863 CDD GT20_TPS 61 546 IPR001830 GO:0003824|GO:0005992
Gso5g0301 863 CDD HAD_TPP 594 833 - -
Gso5g0301 863 Gene3D Glycogen Phosphorylase B; 52 317 - -
Gso5g0301 863 Gene3D Glycogen Phosphorylase B; 318 531 - -
Gso5g0301 863 Pfam Glycosyltransferase family 20 61 546 IPR001830 GO:0003824|GO:0005992
Gso5g0301 863 Pfam Trehalose-phosphatase 596 828 IPR003337 GO:0003824|GO:0005992
Gso5g0301 863 SUPERFAMILY HAD-like 593 839 IPR036412 -
Gso5g0301 863 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0301 Gso-Chr5 3131176 3134646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0301 1 850 Trehalose Biosynthesis Gene Families AT1G23870 64.671 0.0 1188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0301 K16055 - gmx:100808800 1751.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0301 5 3131176 3134646 Gso4g1522 4 44162467 44169104 PCT
Gso5g0301 5 3131176 3134646 Gso6g1552 6 15979131 15986154 PCT
Gso4g1522 4 44162467 44169104 Gso5g0301 5 3131176 3134646 PCT
Gso6g1552 6 15979131 15986154 Gso5g0301 5 3131176 3134646 PCT