Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0291 ATGCAGCCAGGCGGTCGATCTCCTAAGCCAGTGAGCAGTCCAACATCAACATCACAGTTAAAATCTGGTTCAGATAGTGTCCAAAACAGTGTTTCTTCCTTTTCTTCTCATGTTAAGGGTAGGAAAAGGGAGAGGGTAGATCAAGGGCAAGAATCTGTAAAGCGAGACCGTTCAACCAAAAATGATGATGGGGATTCTGGTAATTTTAAGGCGGATAGCATTTTGAAGACAGAGATTGCCAAAGTAACAGAAAAGGGGGGTCTTATTGATCCTGAAGGGGTTGAGAAATTAGTGCAGCTGATGGTTCCTGATGGAAATGAGAAAAAGATTGATTTAGCTAGCCGGTCAATGCTTGCAGCTGTAATTGCAGCAACCGAGAAATTTGATTGCCTTAGTCGGTTTGTGCAACTAAAGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGCACATAAAGGGAAGCTTGGTGAGGGTATTGGGTCTAGGGATGGTGATAAATCTGTTGATGACTTTCTTTTTGTATTACTCCGAGCACTAGATAAGCTTCCAGTAAACCTTCAGGCTCTACAAGCTTGTAACATTGGTAAATCTGTGAATCATTTGCGAACTCATAAAAACTTGGAAATTCAGAAGAAAGCCAGGGGTTTAGTTGACACATGGAAAAAACGTGTTGAAGCTGAAATGATTATAAATGATGCTAGGTCTTGTTCAGTTCAGACTGTCCCCTGGCCAGCCAGACAACGACTTTCTGAAGTTGCTCAAGGTGGGAATAAACATTCAAGTGGGTCAGCTGATGTTGCCATGAAGAGCTCAGTTACACAGCTTTCTGCATCCAAAACTGCCTCTCCGAAGATTGCCCCAGGAGAGAATACTACAAGATCTACATCTGCATCTCCAGGGTCTACGAAATCAGTGCCTTCACCTGCACCCGCAACCGCAAACTTGAAAGATGGACAGCCCCATGCTGCAGCTGTTAGTGGTTCATCTGATCTTCCTGTGGCAAATGCAAGGGATGAGAAAAGTAGCAGTTCTAGTCCATCTCATAACAGTCAATCTTATTCAAGTGACCATGCCAAAGCTGGGGGTTTCTCAGGAAAGGAGGATGCCAGGAGCTCTACTGCAATGAGTGTGAATAAGGTATCAGGAGGCTCTTCACGGCACCGAAGATCTATGAATGGATTTCCGGGTTCAACTCCATCTAGAAGGCAAAGGGAAACTGGATCGAGCAGAAATTCCTCACACAAGAATTTAATTTCAGAGAAAATATCTCAATCTGGATTAAGGGAAAAAGCAAATGATGGAACTCTTCTTGAGGGGCATACTCCGAAGCTGATTGTTAAGATCCCAAACCGAGGTCGAAGTCCTGCACAAAGTGCCACGGCAGGTTCTTCTGATGATCCTTCAATCATGAACAGTCGAGCTTCATCTCCTGCTCTTTCAGAGAAGCATGATCAGTTTGATCGCTGCTCAAAGGAAAAGAGTGATTTTTATCGAGCTAATATTGGTGCAGACATTAATACAGAATCGTGGCAGAGTAACGATTTCAAAGATGTATTGACTGGTTCTGATGAGGGTGATGGATCACCAGCAGCCATTACTGATGAACAGTGTAGGACTGGTGAGGATTGTAAGAAAGTATCAGATGTATCTAAGACAACTTCTTCATCACCTGGGAGTGAGAGTAAAGCCAGGAATTTGCAGGATGCTTCATACAGCTCCATCAATGCTCTTATTGAAGGTGTTAAGTACACTGAAGCTGATGATGTTGGAATGAATCTTCTTGCTCGTGTGGCTGCTGGAGAGATCTCAAAATCTGAATCGGGAATGCCAGCTGGATCCCCTAAAAAAAACACCACTACAATTGAACAGTCATATGCAGGTAATGCTGCAGTAGTCAAGTCCTCTGAAGAGTATCTTGTTCAGGATAAGTGCTACTCTAATGCTGAACATATGAAGCAGGATTCTAGATCTGGTGATTTTGGGACAGATGATGATATTCGGGCATTTGAAGGGAAAGCTACAGGAGAACACAATCCATCTAGTATGGATTTACAGGTTACTGAAACTAGTTTAGAAAGCAAAGGAAAATTAATTGTAAAATCATCTGGTACATCTGCTGGCATTCCTGAAAGCACCTTCCAAGAAGTCAGAGATATTGACTCTAGCAAACTGGTAAAGGAAAAGAAGGTTGTTGTGAGAGTGGATGCTGTCAATAATGTTGATGAGGTCAATGTTGTTGCAAGAGAAGGTGAAACAGAGGCAATTGAAAAATTGTCACACACCTGTGAAGAAGTTGATGTCAAGTGTGATAACCATGCTTCTGAAGGACTAAGCTGTGACAAAGAGACAGCTGGCAAGTCTCCTGCCACTTGTGTGCCCTCTGACTCTGTAAAAGCGACAGATGAGAATGCGCTCCAATCATCTGGTTACATTGTTGATAAGGTTCCTGAATACCTAAATGAAAGGGAATCTGAAAAAAATGATGATATGGCTGCTCAGGATCATGCTAAGCAGTCTTTGAAGCAAAAAAATGAGTCTGAAAATGATGCTATTATGGTGCCCGAGAACAGAGGTTTATGTTCAGGTGCAACTGGTCTTGATGCTGAATATGTGGAAGAGAATTCAGGTACAAAAGAGGTTTGTGACCAAGATGCAGGAGCAGGACAGATACTGCACACAGATTTACCTAGCTTTCCTTCACGAGAAATGGATCAGCATTCAGGTCAAAGGGATTCAAAATTGGCTGCCATGGAATCAGAGGAAGCAGAGGAATGCACCTCTACCACTGGAGATGCCTCTTCTGCATCTGTTGCTGGTGTCTCAGAAGTGGACACAAAAGTTGAATTTGATTTAAATGAAAGGCTCAATGCAGATGACGGGAAATGTAGTGAGATACCTGGGTCTACACCTGCTGCAAGATTGGTCAGTCCTGTTCCATTTTCTGCTTCATCCATGTCTTTTGGTATTCTCTCGATCACAGTGGCTGCTGCTGCTGCAGCAAAGGGCCCCTTTGTGCCACATGAAGATTTATTGAAAAGTAAAAAGGAGCTTGGTTGGAAGGGATCCGCTGCTACTAGTGCATTTCGGCCGGCTGAGCCCAGGAAAGTTATGGAAATTCCTCTTGATATGTCTACTACCCCTATTCCTAATGATGAAGCTAGAAAGCAGAGTCGGGTACCATTGGATTTTGACTTGAATGTTTCCGATGAAATAATACTTGATGATCTTTCTTCTCAGAACTGTGCTCGTCAGACTGATTGTGTAACTCGTTCAGATGATGGGCATGATCCAAATAAATCAATGGCCTCACATGTTCGTTGTTCAGGAGGACTAGGTCTTGACTTGAACCTAGTGGATGGAGCTTCTGACGTGGGCAATTGCACCTTAAGCAGTAGTCATAAAATGGATGTACCACTTACGCAGTTTAAATCAGCCGCCAGTGGTCCTCCAAATGGAAAGATGAGTGTCCTTAGGGATTTTGATCTGAATGATGGACCTATAGTTGATGAAGTCACCACTGAACATTTGATGTCCACACGATCTGCCAGGAATAGTGTACCATCTCAACCTCCTATTTCTGGACTTAGGATGAGTAATGCAGAAGTAGGCAACGTCTCTTCATGGTTTCCTTCCACTGGGAACACCTATTCAGCCGTAACAATATCTTCAATTATGTCTGATAGAGGTGATAAGCCATTTTCAATTGTTGCCCCTAATGTGTCAGAAAGGGTGTTGGGTCCTGCAACTGGCAGCAACCCATTTGGACCTGATATTTATAGGGGGGCAGTTTTGTCATCTTCTCCCGCAGTGCCATATCAATCTGCACCATTTCAGTATCCTGTCTTCCCTTTCAATTCCAGCTTTCCTCTTCCATCAGCATCATTTTCTGGTGGATCAACTCCTTATGTAGATACAACTTCAGGAGGGAGGCTTTGCTTCCCTGTAGTAAATTCACAGCTTATAGGTTCTGTTGGTAATGTTTCAGCCCATTACCCCAGGCCTTACGTTGTTAGTTTCCCAGATGGTAGCAATAGTAGTGGTGCTGAGAACAGTAGGAAAAGGGCAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGTTCAGACTTAGAGGGGAGAGATGAGAGCTCACCTCTTGTACCACGGCAACTTTCTGTTGCTAGTTCACAGGCCCAACTTGAAGAGCAAGCAAGGATGTTTCACTTAAGCAGTGATGTTCTTAAAAGGAAGGAACCCGATGGGGGGTGGGATGGCTACAAGCAATCATCATGGCAGTACCATAATTTGTAA 4287 0.4357 MQPGGRSPKPVSSPTSTSQLKSGSDSVQNSVSSFSSHVKGRKRERVDQGQESVKRDRSTKNDDGDSGNFKADSILKTEIAKVTEKGGLIDPEGVEKLVQLMVPDGNEKKIDLASRSMLAAVIAATEKFDCLSRFVQLKGLPVFDEWLQEAHKGKLGEGIGSRDGDKSVDDFLFVLLRALDKLPVNLQALQACNIGKSVNHLRTHKNLEIQKKARGLVDTWKKRVEAEMIINDARSCSVQTVPWPARQRLSEVAQGGNKHSSGSADVAMKSSVTQLSASKTASPKIAPGENTTRSTSASPGSTKSVPSPAPATANLKDGQPHAAAVSGSSDLPVANARDEKSSSSSPSHNSQSYSSDHAKAGGFSGKEDARSSTAMSVNKVSGGSSRHRRSMNGFPGSTPSRRQRETGSSRNSSHKNLISEKISQSGLREKANDGTLLEGHTPKLIVKIPNRGRSPAQSATAGSSDDPSIMNSRASSPALSEKHDQFDRCSKEKSDFYRANIGADINTESWQSNDFKDVLTGSDEGDGSPAAITDEQCRTGEDCKKVSDVSKTTSSSPGSESKARNLQDASYSSINALIEGVKYTEADDVGMNLLARVAAGEISKSESGMPAGSPKKNTTTIEQSYAGNAAVVKSSEEYLVQDKCYSNAEHMKQDSRSGDFGTDDDIRAFEGKATGEHNPSSMDLQVTETSLESKGKLIVKSSGTSAGIPESTFQEVRDIDSSKLVKEKKVVVRVDAVNNVDEVNVVAREGETEAIEKLSHTCEEVDVKCDNHASEGLSCDKETAGKSPATCVPSDSVKATDENALQSSGYIVDKVPEYLNERESEKNDDMAAQDHAKQSLKQKNESENDAIMVPENRGLCSGATGLDAEYVEENSGTKEVCDQDAGAGQILHTDLPSFPSREMDQHSGQRDSKLAAMESEEAEECTSTTGDASSASVAGVSEVDTKVEFDLNERLNADDGKCSEIPGSTPAARLVSPVPFSASSMSFGILSITVAAAAAAKGPFVPHEDLLKSKKELGWKGSAATSAFRPAEPRKVMEIPLDMSTTPIPNDEARKQSRVPLDFDLNVSDEIILDDLSSQNCARQTDCVTRSDDGHDPNKSMASHVRCSGGLGLDLNLVDGASDVGNCTLSSSHKMDVPLTQFKSAASGPPNGKMSVLRDFDLNDGPIVDEVTTEHLMSTRSARNSVPSQPPISGLRMSNAEVGNVSSWFPSTGNTYSAVTISSIMSDRGDKPFSIVAPNVSERVLGPATGSNPFGPDIYRGAVLSSSPAVPYQSAPFQYPVFPFNSSFPLPSASFSGGSTPYVDTTSGGRLCFPVVNSQLIGSVGNVSAHYPRPYVVSFPDGSNSSGAENSRKRARQGLDLNAGPGSDLEGRDESSPLVPRQLSVASSQAQLEEQARMFHLSSDVLKRKEPDGGWDGYKQSSWQYHNL* 1429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0291 1428 MobiDBLite consensus disorder prediction 1341 1390 - -
Gso5g0291 1428 CDD TFIIS_I 149 225 - -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 549 566 - -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 250 490 - -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 1 70 - -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 453 479 - -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 37 69 - -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 545 566 - -
Gso5g0291 1428 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1424 - -
Gso5g0291 1428 SMART TFS2_5 147 226 IPR003617 GO:0005634
Gso5g0291 1428 MobiDBLite consensus disorder prediction 369 430 - -
Gso5g0291 1428 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1424 - -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 822 850 - -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 1 36 - -
Gso5g0291 1428 ProSiteProfiles TFIIS N-terminal domain profile. 150 227 IPR017923 -
Gso5g0291 1428 Pfam TFIIS helical bundle-like domain 175 224 IPR017923 -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 253 309 - -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 822 851 - -
Gso5g0291 1428 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 94 228 IPR035441 -
Gso5g0291 1428 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 228 IPR035441 -
Gso5g0291 1428 MobiDBLite consensus disorder prediction 335 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0291 Gso-Chr5 3051339 3058356 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso5g0291 Med26 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0291 - - gmx:100806155 2696.77