Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0287 ATGGCATCATTTGCAGGCACTACCCAGAAGTGCACAGCATGTGAAAAGAAAGTGTATTGGGTGGAACAGCTCACTGCTGACAACAAGGTGTACCACAAATCTTGCTTCAGATGTCACCACTGCAAGGGCACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCTCATTTCCATCAACTGTTTAAGATGACTGGCAGCTTGGACAAAAGTTTTGAAGGTGTTCCAAGAAGTGTTAGAGTGGAAAGATCTGCTGATCAGGTCCAAACCAACAAGGTTTCAAGATTATTCTCTGGAACACAAGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGTAAATCTTACCACAAGTCTTGTTTTAGGTGCACCCATGGAGGTTGTGTAATAAGCCCATCAAATTATATTGCCCATGAACATCGTCTTTATTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGCAACTTCAGTCAATTAGACAAGCATGAAAATGTCCAAGTCATCACTGAGATCACAATAACACAACACACTGAGAACACAACACAACATCCGGATCCGAGTAATGGCAATACTGATACAACTCCAGCTGAGGAATCTAGTTAG 648 0.4244 MASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFHQLFKMTGSLDKSFEGVPRSVRVERSADQVQTNKVSRLFSGTQEKCVGCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYIAHEHRLYCRHHHTQLFKQKGNFSQLDKHENVQVITEITITQHTENTTQHPDPSNGNTDTTPAEESS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0287 215 Pfam LIM domain 109 164 IPR001781 -
Gso5g0287 215 Pfam LIM domain 11 66 IPR001781 -
Gso5g0287 215 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 215 - -
Gso5g0287 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Gso5g0287 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Gso5g0287 215 MobiDBLite consensus disorder prediction 191 215 - -
Gso5g0287 215 PANTHER OS06G0237300 PROTEIN 1 215 IPR045268 GO:0051015
Gso5g0287 215 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Gso5g0287 215 SMART lim_4 10 62 IPR001781 -
Gso5g0287 215 SMART lim_4 108 160 IPR001781 -
Gso5g0287 215 CDD LIM2_SF3 109 169 - -
Gso5g0287 215 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Gso5g0287 215 CDD LIM1_SF3 7 68 - -
Gso5g0287 215 Gene3D Cysteine Rich Protein 5 75 - -
Gso5g0287 215 Gene3D Cysteine Rich Protein 103 173 - -
Gso5g0287 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 173 - -
Gso5g0287 215 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Gso5g0287 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0287 Gso-Chr5 3000763 3004638 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gso5g0287 LIM 3.3e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0287 K09377 - gmx:100805084 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0287 5 3000763 3004638 Gso17g0780 17 7238077 7242394 GST
Gso5g0287 5 3000763 3004638 Gso4g1507 4 43915345 43919003 PCT
Gso5g0287 5 3000763 3004638 Gso6g1560 6 16111048 16114611 PCT
Gso4g1507 4 43915345 43919003 Gso5g0287 5 3000763 3004638 PCT
Gso6g1560 6 16111048 16114611 Gso5g0287 5 3000763 3004638 PCT