Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0277 ATGGCTTCTTCAGATCCTATCCCTTCCCGTCATTGCACTTACAACCGCAAGCAAAAATCCCTCGGCCTTCTCTGCACCAATTTTTTGAGTTTATACGATCGAGGGTCTGTTCATCTGATCGGCCTCGACGATGCTGCCATCCGATTAGGCGTTGAGAGGAGGCGGATCTATGACATTGTTAATGTCCTCGAGAGTATTGGGTTGCTATCAAGGAAGGCGAAAAATCAGTATATTTGGAGAGGTTTTGTCGCAATTCCTCACACTCTTCAGGAGCTCAAGGAAGAGGGGTTGAAGGATAATTCCAATTTCTTGCGTGGTTCTGGAAACGACAACGACAAAGTGTCCGACGACGAAGATGACGAGGAAACACTGTCTAATCCCGCTACTGGAAGTCAAAGCGACAAGTTGAACCCTAATTCTTCTACTCTTACTAAATCTCTGAAAAATGAAAATCGAAGGGAAAAATCTCTTGCTCTGCTTACCCAGAATTTTGTTAAGCTCTTTGTCTGCTCTAATGTGGAGTTGATCTCCCTTGACGAGGCTGCAAAATTGTTACTTGGGGATGCCCATAATACTTCTGTAATGAGAACCAAAGTTAGACGCCTATATGACATCGCAAATGTGCTATCCTCCATGAATCTTATTGAGAAGACCCATACGACAGATACAAGAAAACCAGCATTCCGGTGGCTGGGTTCTGAAGGGAAGACATGGAATGAGACACTTCACAAATCAAACCTGAACGAGTCTAGGAAAAGGGCTTTTGGAAGTGATATCACAAACATCAGTTTTGAGAGGAATAACGTGGAATTGTTCACGAATGGCGACTCAAATCCGAATCCTAAGAAGCCAAGAATGGAATATGGCAGTGGGCTGGGTCAGGCAGATGAAAACAATTTAAAACAAGGCACAAAACAAGCTTCAAAGAACTATCAATTTGGTCCTTTCGCTCCGGCTTGTGTGCCCAAAGTTGGAGCCTCTGAGAATAATAATCTGAAGCAGGTGCATGGCTGGGACAGTCTTGCAACTGCAAATAGCCCTCAGTATCAAAATGAAGCCTTGAGAGAACTGTACTCGCATTACATGGAAGCATGGAAATCGTGGTACTCAGAAATTGCTGGGAAGAGGTCATTACAAATTTTGTAA 1146 0.4372 MASSDPIPSRHCTYNRKQKSLGLLCTNFLSLYDRGSVHLIGLDDAAIRLGVERRRIYDIVNVLESIGLLSRKAKNQYIWRGFVAIPHTLQELKEEGLKDNSNFLRGSGNDNDKVSDDEDDEETLSNPATGSQSDKLNPNSSTLTKSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGSEGKTWNETLHKSNLNESRKRAFGSDITNISFERNNVELFTNGDSNPNPKKPRMEYGSGLGQADENNLKQGTKQASKNYQFGPFAPACVPKVGASENNNLKQVHGWDSLATANSPQYQNEALRELYSHYMEAWKSWYSEIAGKRSLQIL* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0277 381 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Gso5g0277 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 8 372 - -
Gso5g0277 381 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Gso5g0277 381 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Gso5g0277 381 MobiDBLite consensus disorder prediction 100 149 - -
Gso5g0277 381 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Gso5g0277 381 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Gso5g0277 381 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Gso5g0277 381 Gene3D - 11 83 IPR036388 -
Gso5g0277 381 Gene3D - 147 234 IPR036388 -
Gso5g0277 381 PANTHER TRANSCRIPTION FACTOR E2F 8 372 IPR015633 GO:0000978|GO:0006357
Gso5g0277 381 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0277 Gso-Chr5 2900602 2904132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0277 11 378 E2F-DP Transcription Factor Family AT3G48160 53.846 1.81e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gso5g0277 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0277 K09391 - gmx:100806151 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0277 5 2900602 2904132 Gso17g0787 17 7324092 7328411 GST
Gso5g0277 5 2900602 2904132 Gso4g1496 4 43726335 43732268 PCT
Gso5g0277 5 2900602 2904132 Gso6g1571 6 16271180 16292946 PCT
Gso4g1496 4 43726335 43732268 Gso5g0277 5 2900602 2904132 PCT
Gso6g1571 6 16271180 16292946 Gso5g0277 5 2900602 2904132 PCT