Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0275 ATGGCTATTACCGGCGAAATTTTCCGACAGAGCATAAAGGAAATGCTTGAGGAGTCTCCTTCCGGTGCGCCGGAACTTCAAGTTCTCGCCGTTGACGACAGCCTCGTTGATCGGAAGGTGATAGAGCGGTTGTTGAGGATTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACGCGTGCTCTTCAGTATCTGGGGTTGGACGGAGGGAACAGTTCTCTCGGGTTTGATAGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACTGGATATGAATTACTCAAGAAAATCAAGGAGTCTTCTGTGTTTAGAGAGATTCCGGTGGTGATCATGTCATCGGAGAATGTTTTGACCCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGATTTTCTGTTGAAGCCAGTCAAATTGTCTGATGTAAGACGCTTAAAAGATTTCATCATGAAAGGGAAAGTGAAGGAAGGGGAGAAAATATCTAACAAAAGAATGAGGTCAATTGATTGCAGTCCACCTCTAACTGCAACATGCTCACCAGTGTCTCTTCCATGCGATCCTCCATCATCATCCTCATCATCATTACTCTCACCATTATCCTCAAAGAAGGCTAGATTGTGA 633 0.4534 MAITGEIFRQSIKEMLEESPSGAPELQVLAVDDSLVDRKVIERLLRISSCKVTVVESGTRALQYLGLDGGNSSLGFDSVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMKGKVKEGEKISNKRMRSIDCSPPLTATCSPVSLPCDPPSSSSSSLLSPLSSKKARL* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0275 210 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 8 210 - -
Gso5g0275 210 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 210 IPR045279 GO:0009736
Gso5g0275 210 Pfam Response regulator receiver domain 28 147 IPR001789 GO:0000160
Gso5g0275 210 ProSiteProfiles Response regulatory domain profile. 27 154 IPR001789 GO:0000160
Gso5g0275 210 MobiDBLite consensus disorder prediction 187 204 - -
Gso5g0275 210 CDD REC_typeA_ARR 28 149 - -
Gso5g0275 210 MobiDBLite consensus disorder prediction 187 210 - -
Gso5g0275 210 Gene3D - 26 173 - -
Gso5g0275 210 SUPERFAMILY CheY-like 25 154 IPR011006 -
Gso5g0275 210 SMART REC_2 26 150 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0275 Gso-Chr5 2878895 2881366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0275 26 168 Response Regulator Gene Family AT3G48100 78.472 1.86e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso5g0275 Response_reg 4.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0275 K14492 - gmx:100527518 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0275 5 2878895 2881366 Gso17g0789 17 7344644 7347013 GST