Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0269 ATGTCTCGCGCCTCTTCCGCCGCCTCCGGCGAGATCATGCTGTTCGGGGTCAGAGTCGTCGTCGATTCGATGAGGAAGAGCGTCAGCATGAACAACCTCTCACAGTACGAACATCCTTTAGACGCCACCACCACCAACAACAACAAAGACGCCGTCGCCGCCGGCTACGCCTCCGCCGACGACGCCGCTCCTCAGAACTCCGGGCGCCACCGCGAGCGCGAGCGAAAGCGAGGAGTTCCGTGGACGGAGGAAGAACACAAGTTGTTTTTGGTTGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTACGTCAAAACGCGAACTCCGACGCAGGTTGCCAGCCATGCTCAGAAGTACTTTCTCCGACGAAGCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGACACGGTCTCTGCAATTCCGATGGAGGAAGAACAGGTCCAGAATCAAGACACCCTGTGTCATTCACAACAACAACCCGTGTTCCCTGCTGAAACTAGCAAAATCAATGGGTTTCCAGCGATGCCAGTGTATCAGTTTGGGGTTGGTTCTTCTGGAGTGATTTCAGTCCAAGGTACTGGAAACCCAATGGAAGAACTCACTCTGGGACAAGGAAACGTGGAAAAACACAATGTGCCAAACAAGGCCTCTACAGTGTCTGGTATCATCACCCCCGGTTCTTCTAGTTCTGCCATTGACCCACCACCGACACTGTCCCTGGGGCTATCCTTCTCATCTGACCAAAGACAGACATCATCAAGACATTCAGCTTTACATGCCATGCAATGTTTCAGCAATGGAGATAGCATCATTAGTGTTGCTTGA 858 0.5245 MSRASSAASGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPLDATTTNNNKDAVAAGYASADDAAPQNSGRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVQNQDTLCHSQQQPVFPAETSKINGFPAMPVYQFGVGSSGVISVQGTGNPMEELTLGQGNVEKHNVPNKASTVSGIITPGSSSSAIDPPPTLSLGLSFSSDQRQTSSRHSALHAMQCFSNGDSIISVA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0269 285 CDD SANT 80 125 IPR001005 -
Gso5g0269 285 Pfam Myb-like DNA-binding domain 80 125 IPR001005 -
Gso5g0269 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 129 IPR017930 -
Gso5g0269 285 Gene3D - 79 131 - -
Gso5g0269 285 MobiDBLite consensus disorder prediction 65 79 - -
Gso5g0269 285 ProSiteProfiles SANT domain profile. 76 129 IPR017884 -
Gso5g0269 285 MobiDBLite consensus disorder prediction 57 79 - -
Gso5g0269 285 SMART sant 77 127 IPR001005 -
Gso5g0269 285 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 11 285 - -
Gso5g0269 285 ProSiteProfiles Myb-like domain profile. 73 125 IPR001005 -
Gso5g0269 285 MobiDBLite consensus disorder prediction 229 258 - -
Gso5g0269 285 SUPERFAMILY Homeodomain-like 75 130 IPR009057 -
Gso5g0269 285 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 76 127 IPR006447 GO:0003677
Gso5g0269 285 PANTHER KIN2 11 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0269 Gso-Chr5 2799613 2801614 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso5g0269 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0269 - - gmx:778059 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0269 5 2799613 2801614 Gso17g0795 17 7412053 7414112 GST
Gso5g0269 5 2799613 2801614 Gso4g1484 4 43525816 43528615 PCT
Gso5g0269 5 2799613 2801614 Gso6g1579 6 16399217 16402066 PCT
Gso4g1484 4 43525816 43528615 Gso5g0269 5 2799613 2801614 PCT
Gso6g1579 6 16399217 16402066 Gso5g0269 5 2799613 2801614 PCT