Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0268 ATGATCTCAGCGCGTGGACCCATCCTTCCAACAACTCCAAGTTCCATTTCCATTGCTCGTCAAATCCAATCAAATTATTCAATACAGCAATTGAATTCACTCAGTGCAAAGTGCAATACCAAATCTAAGTTGTATTTGGTGTTGGACTTCATTAATGGGGGGCATCTCTTCTTTCAATTATATCGCCAGGGTATCTTCAGTGATGATCAGACAAGGCTTTACACTGCTGAGATAGTATCTGCTGTTTCACCCCTTCACAAAAATGGCATCGTGCATCGAGATCTTAAGCCCGAAAACATTCTTATGGATGCTGATGGGCATGTCATGCTAATTGATTTTGGACTGTCAAAAGAGATTGATGAATTGGGAAGATCTAACTGTTTTTGTGGGACTGTAGAATACATGGCTCCAGAAATCCTACTGGCTAAAGGCCATAATAAGGATGCAGATTGGTGGAGTGTTGGTATTCTGTTGTATGAAATGCTAACAGGGAAGGCACCAAAACACAATAACAGAAAGAAACTTCAGGAGAAAATTATTAAAGAGAAAGTAAAACTTCCACCATTCCTTACCAGTGAAGCTCACTCTTTGCTCAACGGATTGCTACAAAAGGATCCATCGACAAGGTTAGGCAATGGGCCAAATGGAGATGATCAGATCAAAAGTCATAAATGGTTTAGGTCAATCAATTGGAAAAAATTGGAGGCAAGAGAACTGGAACCAAATTTCAAACCAGACGTGTCTGCAAAAGATTGTACAGCTAATTTTGACCAATGTTGGACAGCAATGCCTGTTGATGACTCGCCGGCACCCACGCCTACAGCAGGTGACCATTTCCAGGGCCTTGGCTTTCATCTAGCAACCCAAATCTTCTGA 876 0.4155 MISARGPILPTTPSSISIARQIQSNYSIQQLNSLSAKCNTKSKLYLVLDFINGGHLFFQLYRQGIFSDDQTRLYTAEIVSAVSPLHKNGIVHRDLKPENILMDADGHVMLIDFGLSKEIDELGRSNCFCGTVEYMAPEILLAKGHNKDADWWSVGILLYEMLTGKAPKHNNRKKLQEKIIKEKVKLPPFLTSEAHSLLNGLLQKDPSTRLGNGPNGDDQIKSHKWFRSINWKKLEARELEPNFKPDVSAKDCTANFDQCWTAMPVDDSPAPTPTAGDHFQGLGFHLATQIF* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0268 291 Pfam Protein kinase domain 25 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0268 291 SMART serkin_6 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0268 291 Gene3D Transferase(Phosphotransferase) domain 1 51 245 - -
Gso5g0268 291 SMART pkinase_C_6 227 286 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso5g0268 291 PANTHER RIBOSOMAL PROTEIN S6 KINASE 33 285 - -
Gso5g0268 291 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Gso5g0268 291 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 33 285 - -
Gso5g0268 291 Gene3D Phosphorylase Kinase; domain 1 22 268 - -
Gso5g0268 291 ProSiteProfiles AGC-kinase C-terminal domain profile. 227 291 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso5g0268 291 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0268 291 SUPERFAMILY Protein kinase-like (PK-like) 34 277 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0268 Gso-Chr5 2787296 2790847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0268 22 275 AGC Kinase Gene Family AT3G08720 66.142 4.92e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Gso5g0268 Pkinase 1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0268 K04688 - gmx:100800825 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0268 5 2787296 2790847 Gso17g0796 17 7422629 7426877 GST