Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0266 ATGGAACCTCTTCTCTTCAACGACTCCACATTCTCTTCAGCTAACCCTTCTTTGTCTGAGATTTGGCCCTCTCATTTCCCCTCCGATCACACTCCCAGGAAGAGGCGCCTCTCCCCCTCGAGTGATTCTGCCAGCAATAAACATATCAAGTTATCAGCACCAGAATCCCAGGATCAAAACGGTGCGTTGAAGGTTGGTGAAGTAGACGCGACTTCCGTGGCCGGTAACAAGCTACCTCAACAAACCCCGAAACCTAGTTCTTCGGAGCAGGCACCTAAGCAAGACTATATACACGTGCGAGCCAGAAGAGGCCAAGCCACCGATAACCACAGTCTGGCTGAGAGAGCTAGAAGGGAAAAAATCAGTGAGAGGATGAAAATTCTTCAGGATTTAGTCCCCGGGTGCAACAAGGTAATTGGTAAAGCATTTGTGCTGGATGAGATAATTAATTATGTCCAGTCACTGCAACGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAGGCAGTTAGTTCGAGATTGAGCATGAAGCCTACTCTTGAATGTTTTCCTTCAAAAGAAGTTTGCACTCAGGCCGGAATAATATTTGGATCACAACCGGCCAAGGGATATGCTCAAGGATCACAAATGGGATGGCTGCATATGCAGATAGCTGGTGGTTTTGAGAAAGCAACATAA 675 0.4681 MEPLLFNDSTFSSANPSLSEIWPSHFPSDHTPRKRRLSPSSDSASNKHIKLSAPESQDQNGALKVGEVDATSVAGNKLPQQTPKPSSSEQAPKQDYIHVRARRGQATDNHSLAERARREKISERMKILQDLVPGCNKVIGKAFVLDEIINYVQSLQRQVEFLSMKLEAVSSRLSMKPTLECFPSKEVCTQAGIIFGSQPAKGYAQGSQMGWLHMQIAGGFEKAT* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0266 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 173 IPR036638 GO:0046983
Gso5g0266 224 Gene3D - 102 179 IPR036638 GO:0046983
Gso5g0266 224 SMART finulus 111 161 IPR011598 GO:0046983
Gso5g0266 224 CDD bHLH_AtBPE_like 95 174 - -
Gso5g0266 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 155 IPR011598 GO:0046983
Gso5g0266 224 MobiDBLite consensus disorder prediction 42 59 - -
Gso5g0266 224 Pfam Helix-loop-helix DNA-binding domain 109 156 IPR011598 GO:0046983
Gso5g0266 224 PANTHER TRANSCRIPTION FACTOR BPE 37 224 - -
Gso5g0266 224 MobiDBLite consensus disorder prediction 1 24 - -
Gso5g0266 224 Coils Coil 152 172 - -
Gso5g0266 224 MobiDBLite consensus disorder prediction 27 41 - -
Gso5g0266 224 MobiDBLite consensus disorder prediction 1 93 - -
Gso5g0266 224 MobiDBLite consensus disorder prediction 74 93 - -
Gso5g0266 224 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 224 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0266 Gso-Chr5 2757065 2760800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0266 1 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 43.253 4.27e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g0266 HLH 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0266 - - gmx:100809878 445.277