Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0261 ATGGCCAACGGATCCCCTCCTTCAGTTCCCGGCCAACGATCCTCGCCGGAACCCAATCCTCCGAACCATGTCTCCGATTCGAAGGAGGAAACCGCCGCCGCTCCTCCTCCGCCCACCACCAGGAGCACCCGCCCCTCCCGCGCGTGCACCATGCGCGCCGCCTCTCGCCTCCATTCCTCGCCGGCGCCGGTAAAGAAGGAGGCGCCTGCGAAGAAGGAGGATTCGCCGCCACCGCCGCCGTCGCAATGCAGCAAGATCGTGACTCCGCTGGTGGAGCCACCGTCGCCGTCGCAGTTGCCGCGGTGGAACCTGCGGTCGATGTGGGAGTTCGCTTCCGTGCTGAATTTCATGCATCTGTTTAGGCCTCTTTTGAATATCTCGTTGGAATTCTCTGCAGAAGAGTTCGAGACAGCTCTTCTTACCCCCAACGAGACTTTGTTTCATATACATATGCCTTTGCTAAAGGCAATCCCTCCTATTACACGAATGGCACTCACACGCGATACTTGGATAACCGTATTATGCAGGAAATTGAGAGATTGGTGGCATTGGGTTGCCGATGGGGATCTTCCAATTGTTGCTTCACATGGGGTGGAGATTGAAGAATATAAATCACTTGATCCAGGGGTCCGTGTTGTCATCTTAAAAGCATTATGTGACATTCGTGTGGAGCAAGAAGATATCCGAAGTTATATTGACAACTCAATTAAACACGGTGTTCAGCTTTCAACATTCCGTAAAGAGCGTATTGGAGGTGATTCACATGGAATTTCTTATTGGTATGAAGATGACCCCATTATTGGTCATAGGTTGTATCGAGAAAAAAGGAAAACTGAAGTGGTTCAAATGAAGAAAGGGAAACCAAGAGGTTCCCAGGTTCTTTCTAATACATCATACCAGTGGGAAGCAGTTGCTACCAATTTTGATGAATTTGAAGATGTTTCTGAGAAGCTTTTCTCAAGTAAAAACAGAACAGAGGCTTCCATGGGAAAAAAGCTGAAGATAGACATGCTTCCTGAAATTGAGAAAGTTCACAAGAAAAAGGAGAAGTTGCTGAAAAAGCAACACAGACAAGCTCTTCTGCTTGAGAATTACTTGGTTGTTGACGGGCTTGGTCCTGGGCGTTCTCTTCGTGACAGGAAACCTGTTACCTACACTTTTGATGATTATGATCGGTCAATCAATGAGGCAATTAAAGTAACCAAGCAGAAACAGCCATCTCCAGAATGTATGCCCAGGAGAGAATCAGTAGCAAAAGCTGAAGCTTTGTCTAATGGTAAATATGGTCCTCCACATGCCACACAAGATCGGAATTTTGGTATACCATCTCCAGAATCATCTGATTCTGATGATGACAAAGAAGATAATGAAACTGACAACTTGGATCGAAGCAATCGTCAAAGACGGAGACCTAAACGGTATTCAGAAAGAGAGTTTGTTGAAGCAGTATCAGATAATGAGGCAGACTTCGACAGTGATGATGATATTGTTGGAGAAGCCGTATATGATGAAGAATATCTCAAGAAACGCAAGCAGAAAAGGATGTCTTCTAGTAGCTCTGAAGGAGATGAAGAATATCAGTGGGACGAATACAATGTTGAAGATGAAGAAGAAGAAGATGATGACGACGATGACGATTCCTTGAGCATCAGTGAGGATAGTGACAAGCCTCGTAAGGTCAAACAGCTGCAGTTGCATGGTCGTACAAGGAGAGAAACCAAACTCAGGTCTGTGGGTGAGATACAATCGGGTCTAAGACGTAGTAAGAGGGCAACTAAAAATCGTATAAATTACCGACAATGTGAGGTATCAGAATCAGAAACAGAGTTTATCAAATCTGAGAAGTCTAATTCATCAGCTGATCACTCAGATCCCAATGAGAATGGTGAATACATGATGGAAAGTGAAGATTCAGATGACAGTGATAATGAAGAACAAGAAATGAAAGTAGATGACCCTGTTACATATCCTGCAGTAGAAGAGAATGAACAAAACCAGCCTCCTGAAAAATTAAGTAGTCCTGGTCAGGAGGAAGTTGAGAGCAGCACAGGAAAGAGACGCTTCCTTGATTTGAATGAGCTTGCCCCTAGCACTGGTTTCGATGATGGTCCGAACACAATAATGAAAGATGAAGACAATGATTACTGA 2148 0.4511 MANGSPPSVPGQRSSPEPNPPNHVSDSKEETAAAPPPPTTRSTRPSRACTMRAASRLHSSPAPVKKEAPAKKEDSPPPPPSQCSKIVTPLVEPPSPSQLPRWNLRSMWEFASVLNFMHLFRPLLNISLEFSAEEFETALLTPNETLFHIHMPLLKAIPPITRMALTRDTWITVLCRKLRDWWHWVADGDLPIVASHGVEIEEYKSLDPGVRVVILKALCDIRVEQEDIRSYIDNSIKHGVQLSTFRKERIGGDSHGISYWYEDDPIIGHRLYREKRKTEVVQMKKGKPRGSQVLSNTSYQWEAVATNFDEFEDVSEKLFSSKNRTEASMGKKLKIDMLPEIEKVHKKKEKLLKKQHRQALLLENYLVVDGLGPGRSLRDRKPVTYTFDDYDRSINEAIKVTKQKQPSPECMPRRESVAKAEALSNGKYGPPHATQDRNFGIPSPESSDSDDDKEDNETDNLDRSNRQRRRPKRYSEREFVEAVSDNEADFDSDDDIVGEAVYDEEYLKKRKQKRMSSSSSEGDEEYQWDEYNVEDEEEEDDDDDDDSLSISEDSDKPRKVKQLQLHGRTRRETKLRSVGEIQSGLRRSKRATKNRINYRQCEVSESETEFIKSEKSNSSADHSDPNENGEYMMESEDSDDSDNEEQEMKVDDPVTYPAVEENEQNQPPEKLSSPGQEEVESSTGKRRFLDLNELAPSTGFDDGPNTIMKDEDNDY* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0261 715 MobiDBLite consensus disorder prediction 501 520 - -
Gso5g0261 715 MobiDBLite consensus disorder prediction 551 577 - -
Gso5g0261 715 MobiDBLite consensus disorder prediction 458 484 - -
Gso5g0261 715 MobiDBLite consensus disorder prediction 1 95 - -
Gso5g0261 715 MobiDBLite consensus disorder prediction 400 715 - -
Gso5g0261 715 MobiDBLite consensus disorder prediction 600 621 - -
Gso5g0261 715 MobiDBLite consensus disorder prediction 523 550 - -
Gso5g0261 715 MobiDBLite consensus disorder prediction 659 679 - -
Gso5g0261 715 PANTHER REMODELING AND SPACING FACTOR 1 19 714 IPR028938 GO:0006355|GO:0031213
Gso5g0261 715 MobiDBLite consensus disorder prediction 485 500 - -
Gso5g0261 715 MobiDBLite consensus disorder prediction 630 647 - -
Gso5g0261 715 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 19 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0261 Gso-Chr5 2717826 2726647 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gso5g0261 WHIM1 5.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0261 - - gmx:100795519 1316.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0261 5 2717826 2726647 Gso17g0803 17 7493131 7501764 GST
Gso5g0261 5 2717826 2726647 Gso4g1475 4 43393442 43403846 PCT
Gso5g0261 5 2717826 2726647 Gso6g1586 6 16477480 16487068 PCT
Gso4g1475 4 43393442 43403846 Gso5g0261 5 2717826 2726647 PCT
Gso6g1586 6 16477480 16487068 Gso5g0261 5 2717826 2726647 PCT