Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0259 ATGGGGCACAAAAAGCGAAACCCTGCGCCGCGCTCGAAACAATCCCTCGCGGCCGCCACCGCCAACGGTGGTGCCACCTCGCCGGACGCCGACACCGCCTGCAATGTTTCCGATCACAACCCTAGGAAGATCGAATTGGCCACGCTCCAATCCGAGGGTTCCGATTACTCCACAATCAAGCTCGAATGCGAGCGCGCACTCACCACGCTCCGCCGCGGGAACCACACCAAGGCAATGAAGCAGTTGAAGGAGATTTGCGCCAGAGAGGAGGGCTCGCCTCACGCCGCGTTCGTCAACCGAGTCCACAGCCTAATGTGCTTCAAGACGGCGACGGTCATCACCGACCCGAGCTCAAAGCAGCGGCATTTGAGGAACGCGCTCGAGTCGGCTCGGCGCGCGGTGGAGCTCATGCCGAATTCCGTCGAGTACGCGCATTTCCGCGCCACGGTGATGTTGGAGGCTGCGAGTGAAGGGAAGGATTATGAGGAGGTGGTGCACGAGTGTGAGAGGGGGCTCGCCATTGAGAACCCTAGTGATCCTGCGAAGGAGACATTGCAGGATGAGAGCGAGCAGAAAGCTTCTTCTCTTGAGGAACGGATTGCGCACGTGCAGAATGAATTGAGGCAGCTTATTCAGAAGTCGAATATAGCATCGTTGTCGTCTTGGATGAAGAATTTGAGCAATGGGGAGGAGAGGTTTCGGTTGATTCCGATAAGGAGGACCCCGGAGGATCCTATGGAGGTGAGGCTGGTTCAAACAAGGAGGCCTAATGAGATCAAGAAGGTGACCAAGACACCTGAGGAGAGAAGAAAGGAAATTGAAGTCCGAGTGGCTGCTGCTAGGCTGATTCAGAAAAATTCAGAGTCGCCACAATCGGCGAATGAGGGAGATAGGGATGATAGGCAGTTGGATTCATCTGCAGGATCTGGTCAGAGGATTGGCGATAGGAGGAGGCATGGAAACGTTAGGAAGAGTGGCTTTTCAGCTGAGAGGATGAAGTGGGTGCACTCATATTGGAATTCGGTTAGTATGGATATGAAGAAGGACTTTCTTAGGGTTAAAATTTATGATCTTAAGTCGCACTATGGGTCTTCAAAGGATACTTTGCCAAATGATATCTTGTCAGAAGCTTTGTTTTATGCTGGGGCCAATAAAACATGGAAATTCTGGCCTTGCTGCAACTGTGAAGAGAAACATTCCAACCCGGATTCTCACAGGCATCATGTTGTGCAGGAACACATGGGGAGTCTTTCGCCACAAATGCAGAGACTTCTGCCCCACAATGTTGATAGTGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTCTGGATATCCTAGCTGCAGTTAGAATGCTTTATAATAAAGCAAAGTTCAAAAGTTCTTCACTTCCTGAGGATTTGTACTTGGATCATCATGCTCTGGACTATAATGATTGTTTTAAAGATGCAAGCAGCTCTTACATTGAGAAGGAAAGTTCGGGGGACAGTCTTCCTAATTGTTCAGTAGAATGCAACAACCATTATAAAATTATAGAAAATGATGTAAGAGAAGGTGTTGAAGACCAACTTTCTATGGCTAATCCCATTATTGACTGTTGGCCGGTATCTGATGACCCTGAGCGTGCAAAACTCCTGGGGAAAATTCATGCCATTTTTGAGACTCTTATTAAGCACAAATGTCTTGCCGCTAGTCATCTTAACAAGGTCATACAGTTCACTATGGGTGAGATACAGGGTCTTGCTGCTGGTTCTCAACTTCTGAATCATGGTGTGGACCAAACACCAATGTGCATGTGCTTTCTAGGAGCTACACAGCTTAAGACAATTTTCCAATTTCTGCAGGAAATATCTCATGCTTGTGGGTTGGCCAGAAATGCTGATAAAGGTGGTAGTCCCACAAATGATTTGCTCAATATCAGTCAAGGTCCTGAGATTAAAGACAAGATTGTACTTGATGGAGATGCATCATGCCTCCTACTGGATGAGTGTTTATTGCAAACACAAGTCACTGCTGGTACAGTTCAGGGGACTGTCTTGGATGATGTGACCACCCCAAGCTCTCCTGATGGAATTTCATGCTATAACGATGCTTTGCTATCCTGGATATTTTCATGTTCACCTATCGGGGATCAGTTGACATCATGGCTACGGACCAGAGAAGATAAACTAAATAAAGGAAAGGAAATTGTACAGTTGCTTGAGAAGGAGTTTTATCATCTACAGGGCCTATGTGAGAAGAAGGGTGAGCGTGTAAGTTATGAGGAAGCTCTGCAAACAGTGGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGAAACTGTTGGTGAGTTTGTCCAGCGAAGCTATGAATCTGTCTTAAGAAAGCGAAGAGAAGAGCTCATTGAGAGTGAGAATGACATGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAAGAAATGTTAATCAATTTGGCTATGAAGAAACTTATGCTGGTGTGACTTCTCAGTTATGTGACTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGATTACTTGCATCAAATGGATGGTTGTATAGAAAATGCTATTCAGAAACTGAAAGAGCATTTATCCATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGAAGTGTTACAGAGATGCAGCAACTGGAATTCAAGCTTGGGCCTATTTCTGCTAATGACTATCGAGCAATATTAGTGCCTCTAGTGAAGTCGTACCTTAGGGCTCTTTTGGATGATTTGGCTGAGAAGGATGCAAGAGAGAAGTCTGATGCTGTAAGTGAAGCACTTTTGGCTGAAATTGCTCTTGATTCCAAGAAGGCTGTTAAGGGGGGAAGTGAGAGCACAAGGCATGTCGAGAAAACAAAAGATAAGAAGAAGAATAAAGATCACAGAAAAGCAAGAGATTTGAAGGTCGCTAGTGGTCATGCACAGTTCTCACTTGGATCAACAACTCCTGATTCCAATCTAGTTGCACCTGAAAGTGACTTCCCAGATAATGAGGTTGTTGCTATGAACGATGATGACTTGGAACAACTTGAAGAGGAATTTAGGCGTAAGATTGAGTTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAATTTCAGCGAAGGATAGAAAATGAAGCCAAACAGAAGCACCTTGCAGAGCAACAAAAAAAATCATCTGGGTTATACTTGGAAGGAGTGGTAGACAAACTTCAAGATTCTGAAACAAAGGTGGATGCTGATCCACCAGATGCTCATGAACATGTTGGAGTACTTGTGCAGGACCAGCTGGTAAAGGAGAATGGATCCCGAAGCAATTTGGATGGTGTGCTTACACCCACAGCAAATGGTTCCCTTGATAATTATTCGCATCAGTCAAAAGTTAAACAATCAGGTTTGCCTAATGGAGTTGTTCCAGAGAATGGTCTAGATCGCCGTGCAGGAAAAAAACATAAACGGAAAAATTCTTCCAGACAAGTTGATGGAAAGTTTGAACCTGTTTCATCAGGACAAGAGAATATTGAAGATACACATACTGATTATCACCTGAGAGAGCAATTCAAACTTAATAGCAATCAAGATGTTAATAATGTGTGGCAAAACAATGGATCAAAGGTGATGGGAGAGTTGCAAGTAGAAGATGCAGAGGAGGAAAGATTTCAAGCTGATCTTAAAATGGCTGTACGCCAAAGCCTGGACACGTATCAAGCTCGTGGAAATTTGCATTCAGTTTCCAGTTTAAGAATGCCACAGAGAGCTTCTTCACAGGAAGATAGTGTGGATTGTCTGCCTGTGGAAGACTCAACTGATAATGTGAATGGGGCTACATTGCTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCACTATGGCATTTAAGACGCTTTCGGGTGGAATTTCTTGGCAGATCAAGATCAGAGCATGATCATGTGGGTAATCCTTGTGTTGTCTGTGCATTGTATGAAATCTTTACTGCACTGGACACTGCATCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACATCCCTCCGGATAGCTCTAAGCAATCTGTATCCTCACAGTAATTTCTTCCAGGAGGCTCAGATGAACGATGCTTCTGAGGTACTGTCAGTGATATTTGACTGCCTCCATCGGTCATTTATTTGTGGTTCAAGTGTTTCTGATGCAGAATCAGCTGAAAGCAACTGCATGGGATCTTGGGATTGTGCAAATGGTAGTTGTATAGCACATTCACTTTTTGGAATGAACATTTTCGAACAAATGAACTGCTATCACTGTGGTCTTGAATCCAGACATATGAAATATACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTCCGGACAATGAAGGATACGTTTGCTGAAAGTTCCTTCGATAAGCTTTTGAATCTTGTGGAGATGAATCATCAGTTGGCTTGTGATCTAGAAGCTGGTGGCTGTGGCAAGCTCAACCACATCCATCACTTTCTCTCAACTCCACCCCATGTTTTTATGACAGTTCTAGGTTGGCAAAATACAAGTGAGAGTGCCGATGATATAACAGAGACTCTGGCTGCCCTAAGCACCAAGATAGATACCAGTGTCCTTTATTGTGGTTTAGATCCTAAATGCGTCCATAACTTGGTGTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGCCATGACCATGAACAGTGGATTATGTATGATGACAAGACTGTCAAGGTAATTGGTGGATGGGCGGATGTTCTTACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAA 4878 0.4405 MGHKKRNPAPRSKQSLAAATANGGATSPDADTACNVSDHNPRKIELATLQSEGSDYSTIKLECERALTTLRRGNHTKAMKQLKEICAREEGSPHAAFVNRVHSLMCFKTATVITDPSSKQRHLRNALESARRAVELMPNSVEYAHFRATVMLEAASEGKDYEEVVHECERGLAIENPSDPAKETLQDESEQKASSLEERIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRTPEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLIQKNSESPQSANEGDRDDRQLDSSAGSGQRIGDRRRHGNVRKSGFSAERMKWVHSYWNSVSMDMKKDFLRVKIYDLKSHYGSSKDTLPNDILSEALFYAGANKTWKFWPCCNCEEKHSNPDSHRHHVVQEHMGSLSPQMQRLLPHNVDSEWIEMILNCSWKPLDILAAVRMLYNKAKFKSSSLPEDLYLDHHALDYNDCFKDASSSYIEKESSGDSLPNCSVECNNHYKIIENDVREGVEDQLSMANPIIDCWPVSDDPERAKLLGKIHAIFETLIKHKCLAASHLNKVIQFTMGEIQGLAAGSQLLNHGVDQTPMCMCFLGATQLKTIFQFLQEISHACGLARNADKGGSPTNDLLNISQGPEIKDKIVLDGDASCLLLDECLLQTQVTAGTVQGTVLDDVTTPSSPDGISCYNDALLSWIFSCSPIGDQLTSWLRTREDKLNKGKEIVQLLEKEFYHLQGLCEKKGERVSYEEALQTVEDLCLEEGKKRETVGEFVQRSYESVLRKRREELIESENDMMYVSNRFELDAISNVLQEAEARNVNQFGYEETYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIENAIQKLKEHLSIELSKIDARIIRSVTEMQQLEFKLGPISANDYRAILVPLVKSYLRALLDDLAEKDAREKSDAVSEALLAEIALDSKKAVKGGSESTRHVEKTKDKKKNKDHRKARDLKVASGHAQFSLGSTTPDSNLVAPESDFPDNEVVAMNDDDLEQLEEEFRRKIELEEEEKKLEETLEFQRRIENEAKQKHLAEQQKKSSGLYLEGVVDKLQDSETKVDADPPDAHEHVGVLVQDQLVKENGSRSNLDGVLTPTANGSLDNYSHQSKVKQSGLPNGVVPENGLDRRAGKKHKRKNSSRQVDGKFEPVSSGQENIEDTHTDYHLREQFKLNSNQDVNNVWQNNGSKVMGELQVEDAEEERFQADLKMAVRQSLDTYQARGNLHSVSSLRMPQRASSQEDSVDCLPVEDSTDNVNGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRSEHDHVGNPCVVCALYEIFTALDTASKDSRREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLSVIFDCLHRSFICGSSVSDAESAESNCMGSWDCANGSCIAHSLFGMNIFEQMNCYHCGLESRHMKYTSFFHNINASALRTMKDTFAESSFDKLLNLVEMNHQLACDLEAGGCGKLNHIHHFLSTPPHVFMTVLGWQNTSESADDITETLAALSTKIDTSVLYCGLDPKCVHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWADVLTMCERGHLQPQVLFFEAVN* 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0259 1625 MobiDBLite consensus disorder prediction 1115 1186 - -
Gso5g0259 1625 MobiDBLite consensus disorder prediction 175 195 - -
Gso5g0259 1625 Pfam Protein of unknown function (DUF629) 335 868 IPR006865 -
Gso5g0259 1625 MobiDBLite consensus disorder prediction 1115 1144 - -
Gso5g0259 1625 Coils Coil 1021 1062 - -
Gso5g0259 1625 Gene3D Tetratricopeptide repeat domain 52 201 IPR011990 GO:0005515
Gso5g0259 1625 Coils Coil 186 213 - -
Gso5g0259 1625 MobiDBLite consensus disorder prediction 282 325 - -
Gso5g0259 1625 MobiDBLite consensus disorder prediction 957 1007 - -
Gso5g0259 1625 Pfam Ubiquitin carboxyl-terminal hydrolase 1293 1601 IPR001394 GO:0004843|GO:0016579
Gso5g0259 1625 MobiDBLite consensus disorder prediction 1 38 - -
Gso5g0259 1625 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1625 - -
Gso5g0259 1625 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1292 1624 IPR028889 -
Gso5g0259 1625 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1625 - -
Gso5g0259 1625 Gene3D Cysteine proteinases 1279 1623 - -
Gso5g0259 1625 MobiDBLite consensus disorder prediction 992 1006 - -
Gso5g0259 1625 MobiDBLite consensus disorder prediction 13 34 - -
Gso5g0259 1625 MobiDBLite consensus disorder prediction 292 325 - -
Gso5g0259 1625 SUPERFAMILY Cysteine proteinases 1292 1622 IPR038765 -
Gso5g0259 1625 MobiDBLite consensus disorder prediction 181 195 - -
Gso5g0259 1625 CDD Peptidase_C19 1383 1622 - -
Gso5g0259 1625 Pfam Protein of unknown function (DUF627) 65 176 IPR006866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0259 Gso-Chr5 2686421 2696115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0259 55 1622 C2H2 Transcription Factor Family AT3G47890 55.905 0.0 1665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0259 - - gmx:100799759 3226.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0259 5 2686421 2696115 Gso17g0805 17 7516904 7526400 GST