Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0257 ATGGGGAACTGCAACGCCTGCGTTCGAGTCGATGACGTGGCAGACTCAAACCGCGGCAAAAAGAATAAGAAAACCAAACCGAACCCCTACGCGGAGGAAGAGATACGCTCCGGCGTTCCGATCCGTGTGCTGAAGGACGTGACGTCACGGAGCCTCATCGGCGACAAGTACGTGATAGGCCGGGAGCTAGGTCGTGGCGAGTTCGGGATAACGTACCTCTGCACGGACCGCGAAACGAAGCAGGAGCTCGCGTGCAAGTCGATCTCGAAGCGGAAGCTGAGAACCGCGATCGACGTGGAGGACGTGCGGCGAGAGGTGGCGATCATGTCGACGCTGCCGGAGCACGCTAACGTGGTGAAGCTGAAGGCGACTTACGAGGACGAAGAGAACGTTCATCTCGTTATGGAGCTCTGCGCCGGCGGGGAGCTCTTCGACCGGATCGTCGCGCGGGGGCACTACAGCGAGCGTGCCGCCGCGAACGTGGCGAGGACCATTGCTGAGGTTGTTAGGATGTGTCACGCCAATGGTGTTATGCATCGAGACCTTAAACCTGAGAATTTTCTCTTTGCGAATAAGAAGGAGAATTCTGTTCTCAAGGCTATTGACTTTGGACTCTCCGTGTTTTTCAAGCCAGAGGACGAACGAGGGGTGGCTTTGGCAATATTGAGGGGAGTGATTGACTTCAAGAGAGAACCGTGGCCTCAGATTTCAGATAGTGCTAAGAGTCTTGTGCGCCAGATGTTGGAGCATGATCCTAAGAAGCGCTTGACGGCTGAACAGGTGCTTGAGCATTCCTGGTTACAAAATGCAAAGAAAGCTTCAAATGTTCCATTAGGAGATATTGTGAGAACAAGGCTTAGGCAATTCTCTTTGATGAATAGATTAAAAAAGAGAGCACTTCGGGTAATTGCAGAGCATTTGTCTGTTGAAGAGGTAGAAATAATCAAAGACATGTTTACATTGATGGACACAAACAAAGATGGCAAAGTAACATATGAGGAGCTGAAGGTTGGGTTACGGAAGGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCCGTGACAATTCACTTGCAAAGAATGGAGAATGATGAGCATTTCCGCAAAGCATTCATGTATTTTGACAAAGATGGGAGTGGGTATATCGAGTTAGGTGAGCTGGAGAAAGCATTAACAGATGAGTCGGGAGATACTGATACTGCTGTATTGAATGACATCATGCGTGAAGTTGACACTGACAGGGATGGTCGTATCAGTTATGAAGAGTTTGTGGCCATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGATGGCTCACTTCAGCTTCATGATGATATTAGTGGTCAAGCTGTAGTGGTTTGA 1476 0.4885 MGNCNACVRVDDVADSNRGKKNKKTKPNPYAEEEIRSGVPIRVLKDVTSRSLIGDKYVIGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAIDVEDVRREVAIMSTLPEHANVVKLKATYEDEENVHLVMELCAGGELFDRIVARGHYSERAAANVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPEDERGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEHDPKKRLTAEQVLEHSWLQNAKKASNVPLGDIVRTRLRQFSLMNRLKKRALRVIAEHLSVEEVEIIKDMFTLMDTNKDGKVTYEELKVGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMYFDKDGSGYIELGELEKALTDESGDTDTAVLNDIMREVDTDRDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDDISGQAVVV* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0257 491 SMART serkin_6 57 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0257 491 CDD EFh 386 448 IPR002048 GO:0005509
Gso5g0257 491 ProSitePatterns EF-hand calcium-binding domain. 431 443 IPR018247 -
Gso5g0257 491 SUPERFAMILY EF-hand 295 474 IPR011992 -
Gso5g0257 491 Gene3D Transferase(Phosphotransferase) domain 1 144 215 - -
Gso5g0257 491 PANTHER BNAA09G44420D PROTEIN 17 213 - -
Gso5g0257 491 PANTHER BNAA09G44420D PROTEIN 212 467 - -
Gso5g0257 491 ProSiteProfiles Protein kinase domain profile. 57 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0257 491 ProSitePatterns EF-hand calcium-binding domain. 323 335 IPR018247 -
Gso5g0257 491 Pfam Protein kinase domain 223 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0257 491 Pfam Protein kinase domain 57 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0257 491 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509
Gso5g0257 491 SUPERFAMILY Protein kinase-like (PK-like) 42 286 IPR011009 -
Gso5g0257 491 Gene3D Transferase(Phosphotransferase) domain 1 216 277 - -
Gso5g0257 491 Pfam EF-hand domain pair 385 448 IPR002048 GO:0005509
Gso5g0257 491 Pfam EF-hand domain pair 315 374 IPR002048 GO:0005509
Gso5g0257 491 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Gso5g0257 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Gso5g0257 491 ProSiteProfiles EF-hand calcium-binding domain profile. 418 453 IPR002048 GO:0005509
Gso5g0257 491 Gene3D - 278 451 - -
Gso5g0257 491 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Gso5g0257 491 SMART efh_1 350 378 IPR002048 GO:0005509
Gso5g0257 491 SMART efh_1 314 342 IPR002048 GO:0005509
Gso5g0257 491 SMART efh_1 386 414 IPR002048 GO:0005509
Gso5g0257 491 SMART efh_1 422 450 IPR002048 GO:0005509
Gso5g0257 491 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Gso5g0257 491 Gene3D Phosphorylase Kinase; domain 1 58 143 - -
Gso5g0257 491 PANTHER SERINE/THREONINE-PROTEIN KINASE 212 467 - -
Gso5g0257 491 PANTHER SERINE/THREONINE-PROTEIN KINASE 17 213 - -
Gso5g0257 491 ProSiteProfiles EF-hand calcium-binding domain profile. 346 381 IPR002048 GO:0005509
Gso5g0257 491 ProSiteProfiles EF-hand calcium-binding domain profile. 310 345 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0257 Gso-Chr5 2663879 2667894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0257 1 491 EF-hand Containing Proteins AT1G74740 69.231 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso5g0257 Pkinase 5.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0257 K13412 - gmx:100779935 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0257 5 2663879 2667894 Gso17g0806 17 7538578 7542363 GST