Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0250 ATGGCGGGTAGTGGAAGTGCCTTTTCCAACATCACTAGCTTTCTTCGCACCCAACAACCCTCTTCTCAACCTCTCGATTCTTCTCTCTTCCTCTCTGCACCTTCCTCTGCTCCTTTCCTCGGTTCGAGATCCATGATGAGTTTTGATGGAGAAGGAGGGAAGGGGTGTAACGGCTCCTTCTTCCGCGCGTTTGACATGGACGACAATGGGGATGAGTGCATGGACGAGTACTTTCATCAACCCGAGAAGAAGCGACGTCTCTCTGCGAGCCAGGTTCAGTTTCTAGAGAAGAGCTTCGAGGAGGAGAACAAGCTTGAACCCGAGAGAAAGACCAAACTAGCCAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTCCAGAACCGTAGAGCTCGGTGGAAGAACAAACAGCTGGAGAAGGATTACGAGACTCTGCATGCAAGTTTTGAGAGTCTCAAGTCCAACTATGACTGTCTTCTCAAGGAGAAAGACAAGTTAAAAGCTGAGGTGGCGAGCCTCACTGAGAAGGTGCTTGCAAGAGGGAAACAAGAGGGGCACATGAAGCAGGCTGAAAGTGAAAGTGAAGAAACAAAAGGATTATTGCATTTGCAGGAACAGGAACCACCCCAGAGGCTTTTACTGCAATCAGTTTCGGAGGGAGAAGGATCCAAAGTCTCTTCTGTCGTTGGGGGTTGTAAACAGGAAGATATCAGTTCAGCAAGGAGTGACATTTTGGATTCAGATAGTCCACATTACACCGATGGAGTTCACTCTGCGCTGCTAGAGCATGGTGATTCTTCTTATGTGTTTGAGCCTGATCAATCAGATATGTCACAAGATGAAGAAGATAACCTCAGCAAGAGTCTCTACCCTTCGTACCTCTTTCCCAAACTTGAAGAAGATGTGGATTACTCCGACCCACCTGAAAGTTCTTGTAATTTTGGATTTCCTGAGGAAGATCATGTCCTTTGGACCTGGGCTTACTACTAA 996 0.4739 MAGSGSAFSNITSFLRTQQPSSQPLDSSLFLSAPSSAPFLGSRSMMSFDGEGGKGCNGSFFRAFDMDDNGDECMDEYFHQPEKKRRLSASQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKNKQLEKDYETLHASFESLKSNYDCLLKEKDKLKAEVASLTEKVLARGKQEGHMKQAESESEETKGLLHLQEQEPPQRLLLQSVSEGEGSKVSSVVGGCKQEDISSARSDILDSDSPHYTDGVHSALLEHGDSSYVFEPDQSDMSQDEEDNLSKSLYPSYLFPKLEEDVDYSDPPESSCNFGFPEEDHVLWTWAYY* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0250 331 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 8 330 - -
Gso5g0250 331 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Gso5g0250 331 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Gso5g0250 331 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
Gso5g0250 331 Gene3D - 77 152 - -
Gso5g0250 331 CDD homeodomain 83 139 IPR001356 GO:0003677
Gso5g0250 331 Pfam Homeodomain 83 137 IPR001356 GO:0003677
Gso5g0250 331 Coils Coil 137 178 - -
Gso5g0250 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 8 330 IPR045224 GO:0003700
Gso5g0250 331 SUPERFAMILY Homeodomain-like 67 140 IPR009057 -
Gso5g0250 331 SMART HOX_1 81 142 IPR001356 GO:0003677
Gso5g0250 331 Pfam Homeobox associated leucine zipper 138 179 IPR003106 GO:0006355|GO:0043565
Gso5g0250 331 Coils Coil 189 209 - -
Gso5g0250 331 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0250 Gso-Chr5 2578295 2580556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0250 81 186 Homeobox Transcription Factor Family AT3G01470 68.868 3.55e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso5g0250 Homeodomain 6.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0250 - - gmx:100799054 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0250 5 2578295 2580556 Gso17g0813 17 7631999 7634001 GST