Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0239 ATGGAGCTTGCTTCGGAGAGATCTGGTGATGGAGGTATTGGACTCAAGGAAGAAGATAGTGCTGGTGATGATGATGGTCATCATAAACAAGAGATTATTGTCGAGGAACCACCCGTGACTAATACCGAAAGTTCCATACTGGAGGCTCCGCCTAGCACATCCCCAAACAAAAAAGAAGAGGTTGTTAATCAGCTTGAGACTGCCAAAGCTGAAATGGGTGTAGCGAGAGAAGAAAATCAACTGCTAAAGACGTGTTTGAACAAAATAATGAATGAATATCGGACACTAGAGATGCAATTTCAGGATATACTAAAGCAACAAGGGACAAAAAAGAACGCTGATAAAGGAAATGATGATAAGCATGAAGAAATATTAGAGGAAGCGGATCTTGTTTCCCTCTGCCTTGGAAGAGTTCCAAGAAGTGATGAGAAAATCAAAGTTTCTAATAAGCCATTGAAGGATGATGAAGGGTTGACTCTTGGACTAGAGTGCAAATTTGAAACATCAAAGTCAGGAAGCACAAATGAAGCTTTACCTAATAATCCAAGCCCAGAAAATAGTTGTGAAGTAGTACCAAAGGAAGAAGGTGGGGAAAGTAAGGAGGCACTAAAGACAATGAGATCAGACACAGAGGATGAAGTTGCTCAGCAAAATCCTACAAAGAAACCTCGAGTTTGTGTTAGAGCAAGATGTGACACTCCAACAATGAACGACGGATGCCAATGGAGGAAATATGGACAAAAGATTTCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACAATTGCACCATCATGCCCAGTTAGAAAACAGGTGCAAAGATGTGTTGACGACATGTCCATTTTATTCACCACTTACGAGGGAACCCACAACCACACTCTTCCACCATCAGCTACTGCTATGGCATCCACAACTTCCGCAGCTGCATCCATGTTATTGTCTGGTTCATCAACCTCTAACTCTGCCTCAATACCTTCAACAGCAACCACAAATCTCCAAGGCCTCAACTTTTATCTCTCAGACGGTTCAAAACCAAGGCAACTATACCTCTCCAACCCTGCACTATCATCTTCACTTTCACATCCAACCATCACTCTCGACCTCACTACTTCACACCCTTCAGCCTCTTCCTCATCATCATCACCCTTTGTCAGATTCAATTCAAACTACAACAACAATCACCAACCCAGATACCCCTCTTCCTCATCAAGCCTAAGCTTCAGTACTAGTAATTCCTCCGAAATTGCTAATGCTATATCTTGGAGCAACGGCTTCCTCAACAATAATAGGAACATCCTTAGCAGTGTGAACTTTGGAAGACAACAAATGGAAAACATGAACCAGTCCTACATGCAAAAGAACAACAACAACACAAGCCTTCTTCCTCAAGCTGATACTATATCTGCAGCAACGAAAGTGATCACAGCGGACCCCGCTTTTCAGTCAGCTTTGGCAGCAGCACTTACTTCGTTTATTGGCGGTGGTGGTGTTGGAAACACGCGAGGAAGTCAAGGTGGTAATGTTGTTGGAGAAAGTTTGAGTTTGGGTCAGAAAATGAAATGGGGTGAGGTGTTTCCAGCGTCTAATAATTCTAATTCTTCAATTTCGAACAATAAAGTCAATGGTTGTGCATCCAGCTTCTTGAACAAAACGCCGGCAGCGAATACACAGACGAAAAATTTGATGTTTCTGCCGCCGTCGTCATTGCCGTTTTCTTCTACTCCCAAAAGTGCATCTGCATCTCCTGCTGCTGATAATAGCGACACCACCACCAATTGA 1785 0.4303 MELASERSGDGGIGLKEEDSAGDDDGHHKQEIIVEEPPVTNTESSILEAPPSTSPNKKEEVVNQLETAKAEMGVAREENQLLKTCLNKIMNEYRTLEMQFQDILKQQGTKKNADKGNDDKHEEILEEADLVSLCLGRVPRSDEKIKVSNKPLKDDEGLTLGLECKFETSKSGSTNEALPNNPSPENSCEVVPKEEGGESKEALKTMRSDTEDEVAQQNPTKKPRVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTIAPSCPVRKQVQRCVDDMSILFTTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSNSASIPSTATTNLQGLNFYLSDGSKPRQLYLSNPALSSSLSHPTITLDLTTSHPSASSSSSSPFVRFNSNYNNNHQPRYPSSSSSLSFSTSNSSEIANAISWSNGFLNNNRNILSSVNFGRQQMENMNQSYMQKNNNNTSLLPQADTISAATKVITADPAFQSALAAALTSFIGGGGVGNTRGSQGGNVVGESLSLGQKMKWGEVFPASNNSNSSISNNKVNGCASSFLNKTPAANTQTKNLMFLPPSSLPFSSTPKSASASPAADNSDTTTN* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0239 594 MobiDBLite consensus disorder prediction 11 34 - -
Gso5g0239 594 ProSiteProfiles WRKY domain profile. 231 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g0239 594 MobiDBLite consensus disorder prediction 170 187 - -
Gso5g0239 594 MobiDBLite consensus disorder prediction 37 61 - -
Gso5g0239 594 Pfam WRKY DNA -binding domain 237 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g0239 594 MobiDBLite consensus disorder prediction 191 218 - -
Gso5g0239 594 SUPERFAMILY WRKY DNA-binding domain 229 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g0239 594 SMART WRKY_cls 236 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g0239 594 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 47 588 - -
Gso5g0239 594 MobiDBLite consensus disorder prediction 371 408 - -
Gso5g0239 594 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 47 588 IPR044810 GO:0003700
Gso5g0239 594 MobiDBLite consensus disorder prediction 567 594 - -
Gso5g0239 594 Coils Coil 58 78 - -
Gso5g0239 594 Coils Coil 86 106 - -
Gso5g0239 594 MobiDBLite consensus disorder prediction 170 221 - -
Gso5g0239 594 MobiDBLite consensus disorder prediction 1 61 - -
Gso5g0239 594 Gene3D WRKY domain 221 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0239 Gso-Chr5 2484078 2490451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0239 72 572 WRKY Transcription Factor Family AT5G15130 39.885 1.42e-77 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso5g0239 WRKY 1.4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0239 - - gmx:100793946 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0239 5 2484078 2490451 Gso17g0823 17 7724460 7729340 GST
Gso1g0372 1 4711945 4718189 Gso5g0239 5 2484078 2490451 PCT