Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0236 ATGGGGAAGTCACCAGGAAAATGGATCAAAACTGTACTGTTCGGGAAAAAGTCATCTAAATCAAATATTTCAAAAGGCAGAGAGCTTGTTAATCAAAAAGGAGTAGTAGTTACCTCCAAGGTGCCAGAAACTGGTTTGGCTTTAGAACCAACCTCCGATACTATTGCCAGACATGAGGAAGATCCAGAGCTGGAAAATAAAGAAGCAGAAAATGTTTTACCCGGGAATCAAGAAATAGACACAGTGGGATCAATTAATGAAGATGCTGCACTAGATCCAGAGAAAATGAGGCTGGAGGAAGCAGCTACAAAGGCACAAGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCTCTAAAAGGAATAATAAGGTTGCAAGCACTCATCCGTGGGCACTTGGTTAGGAGACAAGCTGTTGTTACATTATGCTCAATGTATGGTATTGTCAAGTTTCAAGCACTTGTTCGTGGAGGAATAGTTAGACAGTCTAATGTTGGATCTGAAATCCATGAGAAGTCCAATATATTGAACCCTCTGGATGGCAAGCTTGTCAAGCCAAATGCTATGTTCACGAAAATTACCAAGCTGTCTGCAAATGCTTTCATTCGGAAGCTTCTTACTTCGTCAACTACAATAATGGCGCTGCGGTTGCAATATGTTCCCGGCGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGATACTAAGTCTCAGAGAAAGCATGGCAATATTTCAGTTGGAGATACTCATGTGAGCAAGTCAAAACGAATCAACAGGAAGCTTCCTACTGCAAGTTTTGACTCGGTCCCAGTGCAAGCAAATCCTGAATTTGAAAAACCAAAACGAAACACAAGGAAAATTTCAAACCAATCCTCAGATCCTCATGTGCAGGAAAACCCACAAAGTGAGCTTGAAAAGATTAAACGTAACTTGAGAAAGGTTTATAACCCAGTTGTTGAGAATGCTGTTCCGTCAGAAGTTGAATCCGAAATGCCAAAGGATCATTTGGAAAAGGTAACAGTTACCTCATGCCTTGCTGTTTCAGAGCAAGAGGTCATTAGTTCTAATGAGAAGATCAAGAAGGAAGCAATATTAACTGTTTCCAGTGTGCCAGATATAGAAACTACTCCAAGACTTTCAGTTAGTAAGGAGGTGTCTGACACACCAAGCAGTTATCAAGTGACTGTGGAATCAAAACCATTGACTGAGATTACAACTAAAGATAAAAACATTTCTGTTTCTGACGAAGTAAAAAATGAGCCCATAGATTTACCAGAGCCTATTTGTAAAGATGAAAATTCTCACTTAACAAATGGAGATTTGAGTCACAAGGAAGATCAAATAGGCAGTGAAAACCAGAAACCAAACCAAAAAGCCTCAATTGTAGCAAAGCAGGAACGTGCAGAGAATGGTATACAGAATAGTCCAACATTACCGAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTGAGGGCACAAGGATCCCCAAGATTTGGACAGGATGGAAGTGAAAGAAACAACCATACTCGGCGACATTCTCTGCCATCCTCAACTAACAGCAAAATTAATTCACCTTCACCTAGGACACAGAGACCAGTTCAATCAGGTGGCAAAGGTGGCCACAGAAGTGACAGAACTGTATCATCTTCTAGAGATGGGAATGGAAAGGTAATTCAAGCAGAGTGGAGGCGGTAA 1758 0.4147 MGKSPGKWIKTVLFGKKSSKSNISKGRELVNQKGVVVTSKVPETGLALEPTSDTIARHEEDPELENKEAENVLPGNQEIDTVGSINEDAALDPEKMRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCSMYGIVKFQALVRGGIVRQSNVGSEIHEKSNILNPLDGKLVKPNAMFTKITKLSANAFIRKLLTSSTTIMALRLQYVPGDPNSVLSWLERWSASHFWKPVPQPKKIRDTKSQRKHGNISVGDTHVSKSKRINRKLPTASFDSVPVQANPEFEKPKRNTRKISNQSSDPHVQENPQSELEKIKRNLRKVYNPVVENAVPSEVESEMPKDHLEKVTVTSCLAVSEQEVISSNEKIKKEAILTVSSVPDIETTPRLSVSKEVSDTPSSYQVTVESKPLTEITTKDKNISVSDEVKNEPIDLPEPICKDENSHLTNGDLSHKEDQIGSENQKPNQKASIVAKQERAENGIQNSPTLPSYMAATESAKAKLRAQGSPRFGQDGSERNNHTRRHSLPSSTNSKINSPSPRTQRPVQSGGKGGHRSDRTVSSSRDGNGKVIQAEWRR* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0236 585 MobiDBLite consensus disorder prediction 247 262 - -
Gso5g0236 585 MobiDBLite consensus disorder prediction 247 321 - -
Gso5g0236 585 ProSiteProfiles IQ motif profile. 122 149 IPR000048 GO:0005515
Gso5g0236 585 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Gso5g0236 585 MobiDBLite consensus disorder prediction 455 470 - -
Gso5g0236 585 PANTHER PROTEIN IQ-DOMAIN 31 1 573 - -
Gso5g0236 585 Gene3D - 95 144 - -
Gso5g0236 585 PANTHER IQ-DOMAIN 5-RELATED 1 573 - -
Gso5g0236 585 MobiDBLite consensus disorder prediction 533 554 - -
Gso5g0236 585 SMART iq_5 120 141 IPR000048 GO:0005515
Gso5g0236 585 SMART iq_5 97 119 IPR000048 GO:0005515
Gso5g0236 585 MobiDBLite consensus disorder prediction 431 449 - -
Gso5g0236 585 MobiDBLite consensus disorder prediction 486 501 - -
Gso5g0236 585 Pfam Protein of unknown function (DUF4005) 484 564 IPR025064 -
Gso5g0236 585 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Gso5g0236 585 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515
Gso5g0236 585 MobiDBLite consensus disorder prediction 431 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0236 Gso-Chr5 2458250 2465128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0236 1 585 IQD Protein Family AT1G74690 42.995 2.36e-121 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0236 - - gmx:100794636 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0236 5 2458250 2465128 Gso17g0826 17 7750629 7757796 GST
Gso1g0377 1 4775966 4781282 Gso5g0236 5 2458250 2465128 PCT